Gene VC0395_0516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0516 
Symbol 
ID5134792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand- 
Start bp569960 
End bp570547 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content46% 
IMG OID640530838 
Productputative lipoprotein 
Protein accessionYP_001215355 
Protein GI147671791 
COG category[S] Function unknown 
COG ID[COG3266] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTATAT CTATGAAAAA AATCGCAGTT ATTGGGCTAT CAGCACTTCT TGCAGCTTGC 
GCATCCGGTG AATACACCAC AGACGTGAAG ACAGAAAGTC ATCGCGAAGA ATATTCAGTT 
GCCGCTGTTG AGCAGCCTGT CATTTCCGAA TATGGTGTGG CAGACGGCAT TTCTGAGCAG 
AACGTTGAAC AAAACGTTGT AAAAATGACG CCGGACAGCG AGAAAAAAGT AGTCAAGATG 
AGTCCACAGG CTAAGCCTGC CGTCTCCATT ACTCCGCCTA GCGCCAAACA AGTCGCAATG 
AATCCTCGTT ATGGTTTTAC CATTCAAGTG GTTGCTGTGG GTGCGCAAAG TAAAGTGGAC 
CAATTCGCAT CTAAACTCCC TAGAAATGGC CAACCTATTT GGGAAAACTA CAAACTGGTC 
AATGGTACAA AATGGTATAC CGTACTTTAC GGAGATTATG CGACTCGCCA AGAGGCCGCC 
GCTGCTATTT CAAGCCTTCC AGTTGAATTG CGAGAAATGA AGCCTTTCGT GAAGAGCATT 
GATTCGATCA AGAACTCGGA ATTCCCGACG CTTAATAAGC TCAACTAA
 
Protein sequence
MTISMKKIAV IGLSALLAAC ASGEYTTDVK TESHREEYSV AAVEQPVISE YGVADGISEQ 
NVEQNVVKMT PDSEKKVVKM SPQAKPAVSI TPPSAKQVAM NPRYGFTIQV VAVGAQSKVD 
QFASKLPRNG QPIWENYKLV NGTKWYTVLY GDYATRQEAA AAISSLPVEL REMKPFVKSI 
DSIKNSEFPT LNKLN