| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1528 |
|---|
| Symbol | |
|---|
| ID | 5170833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 1516212 |
|---|
| End bp | 1516904 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640564054 |
|---|
| Product | phosphoribosylaminoimidazole-succinocarboxamide synthase |
|---|
| Protein accession | YP_001245112 |
|---|
| Protein GI | 148270652 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0152] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase |
|---|
| TIGRFAM ID | [TIGR00081] phosphoribosylaminoimidazole-succinocarboxamide synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.293769 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAATTACG AAGGAAAGAC AAAAATTGTT AAGGTCACCG ACGACTATGC CCTGCTCGAG
TTCAAAGACG ATATAACCGC TGGTGACGGA TTGAAGCACG ATGTTCTAAC GGGCAAAGGA
TCCATCTGCG CAGAAACAAC TGCTATCCTC ATGAAATATC TCTCCGAGAA AGGTATCAAA
ACCCACCTCG TTGAATACAT CCCCCCTCGA ACACTGAAAG TCATTCCTCT GAAAATGTTC
CCTCTCGAAG TGGTCGTGAG ATTGAAAAAG GCAGGATCTT TCGTGAGAAG GTACGGTGGA
GTTGAAGGGG AAGACCTTCC AGTTCCTCTC GTTGAGTTCT TCATAAAAGA CGACGAAAGA
CACGATCCAA TGGTCTGTGT TGATCATCTC GAAATACTCG GCATCGCAAC AAGGGAACAA
GCTGAAAAAA TGAAAGAAGC GGCGGTGAAG GCCACTCTTG CTCTCAAAGA GTTTTTTGAA
AGGGCGAATT TCGAGCTCTG GGATATAAAG TACGAGTTTG GCCTAGACAA AGATGGAAAC
GTCGTTCTCG GTGACGAAAT CTCTCCCGAC ACGTTCAGAT TGAGAAAGAA GGGTGAAATC
TTCGATAAAG ATGTGTACAG AAGGGATCTT GGTGATCCCT TAAAAAAGTA CAGGGAGGTG
CTGGAACTTT GCCGCTCTTT AAATTCGCAA TAG
|
|---|
| Protein sequence | MNYEGKTKIV KVTDDYALLE FKDDITAGDG LKHDVLTGKG SICAETTAIL MKYLSEKGIK
THLVEYIPPR TLKVIPLKMF PLEVVVRLKK AGSFVRRYGG VEGEDLPVPL VEFFIKDDER
HDPMVCVDHL EILGIATREQ AEKMKEAAVK ATLALKEFFE RANFELWDIK YEFGLDKDGN
VVLGDEISPD TFRLRKKGEI FDKDVYRRDL GDPLKKYREV LELCRSLNSQ
|
|---|
| |