| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1517 |
|---|
| Symbol | |
|---|
| ID | 5171396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1505276 |
|---|
| End bp | 1505926 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640564043 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001245101 |
|---|
| Protein GI | 148270641 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCGG TGATTTTCGA CATGGATGGA GTGCTCATGG ACACAGAGCC TCTCTACTTC
GAAGCTTACA GAAGAGTCGC GGAAAGCTAT GGAAAACCTT ACACGGAGGA TCTCCACAGG
AGAATAATGG GAGTTCCTGA AAGAGAAGGT CTTCCCATCC TCATGGAAGC TCTGGAGATA
AAAGATTCTC TGGAGAACTT CAAAAAGAGG GTCCACGAAG AAAAAAAGCG CGTTTTCTCT
GAGCTTCTCA AGGAAAATCC GGGTGTAAGA GAGGCGCTCG AGTTCGTAAA GAGCAAAAGA
ATAAAACTCG CGCTCGCAAC CTCCACACCA CAGCGAGAAG CGCTGGAGAG ATTGAGAAGA
CTCGATCTCG AAAGGTACTT CGATGTCATG GTGTTCGGTG ATCAGGTGAA GAACGGAAAG
CCTGATCCAG AGATATACCT TCTCGTTCTG GAAAGGTTGA ATGTGGTCCC AGAGAAGGTT
GTGGTCTTCG AAGACTCAAA GAGCGGTGTT GAAGCCGCAA AAAGCGCCGG CATAGAAAGA
ATCTATGGAG TCGTTCACTC TTTGAACGAC GGTAAAGCGC TTCTTGAAGC GGGTGCGGTT
GCTCTGGTGA AACCCGAGGA AATCCTGAAC GTTCTCAAAG AGGTTCTTTA A
|
|---|
| Protein sequence | MEAVIFDMDG VLMDTEPLYF EAYRRVAESY GKPYTEDLHR RIMGVPEREG LPILMEALEI
KDSLENFKKR VHEEKKRVFS ELLKENPGVR EALEFVKSKR IKLALATSTP QREALERLRR
LDLERYFDVM VFGDQVKNGK PDPEIYLLVL ERLNVVPEKV VVFEDSKSGV EAAKSAGIER
IYGVVHSLND GKALLEAGAV ALVKPEEILN VLKEVL
|
|---|
| |