Gene Tpet_1420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1420 
SymbolprfA 
ID5171484 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand- 
Start bp1408150 
End bp1409178 
Gene Length1029 bp 
Protein Length342 aa 
Translation table11 
GC content45% 
IMG OID640563949 
Productpeptide chain release factor 1 
Protein accessionYP_001245009 
Protein GI148270549 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1
[TIGR00020] peptide chain release factor 2 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAGAAA AGAAAAAAGA GATCGAAAAG CTCCTCGCCA GGCCAGATCT GACTCCCGAA 
CAGATGAAGA ACTACGGGAT GGAATACGCA AAGATAGAAG AAATAGAGAA CATCACAAAC 
AGAATAAAAG AAACTCAAGA GTTCATCGAA CTTTTGAGAG AAGAAGGAGA AAATGAACTG 
GAGATAGAAA AGTACGAGAA AGAACTCGAT CAGCTCTATC AAGAACTTCT CTTGCTTCTT 
TCTTCAGAAG TGGGTGATAA AGCAATCGTA GAAATCAGAC CCGGCGCAGG TGGAGAAGAA 
GCCGCTCTCT TCGCGCGGGA TCTGTTCAGA ATGTACACCA GGTACGCAGA AAGAAAAGGC 
TGGAACCTCG AAGTCGCTGA AATCCACGAA ACGGATCTCG GTGGAATAAG GGAAGTGGTC 
TTCTTTGTGA AGGGAAAGAA CGCTTACGGT ATTTTGAAGT ACGAAAGCGG TGTCCATAGA 
GTCCAGAGAG TTCCTGTTAC AGAGTCTGGA GGGAGAATCC ATACGTCCAC CGCTACCGTT 
GCCGTTCTTC CAGAGATTGA AGAAAAGGAT ATAGAAATCA GGCCGGAAGA CTTGAAGATA 
GAAACTTTCA GGGCATCGGG ACACGGTGGA CAGTACGTCA ACAAGACCGA ATCCGCTGTG 
AGGATCACAC ATCTTCCAAC GGGAATAGTG GTCTCGTGTC AGAACGAAAG ATCTCAGTAT 
CAGAACAAAC AAACCGCTCT GAGGATCCTC AGAGCAAGAC TCTACCAGCT ACAGAAGGAA 
CAGAAAGAAA GGGAGATCTC GCAGAAGAGA AAATCACAGA TAGGAACTGG TGAGAGAAGC 
GAAAAAATCA GAACTTACAA CTTCCCCCAG AACAGAGTTA CGGATCATAG AATAAACTAC 
ACTTCTTATA GACTGCAGGA GATCCTCGAT GGAGACCTGG ACGAAATCAT ATCGAAGCTT 
ATAGAACACG ACATAGAAAA CAACCTAGAG GAAGTTTTAG GAATTGGAGC CTCAGTCGAA 
GAAAAGTAA
 
Protein sequence
MKEKKKEIEK LLARPDLTPE QMKNYGMEYA KIEEIENITN RIKETQEFIE LLREEGENEL 
EIEKYEKELD QLYQELLLLL SSEVGDKAIV EIRPGAGGEE AALFARDLFR MYTRYAERKG 
WNLEVAEIHE TDLGGIREVV FFVKGKNAYG ILKYESGVHR VQRVPVTESG GRIHTSTATV 
AVLPEIEEKD IEIRPEDLKI ETFRASGHGG QYVNKTESAV RITHLPTGIV VSCQNERSQY 
QNKQTALRIL RARLYQLQKE QKEREISQKR KSQIGTGERS EKIRTYNFPQ NRVTDHRINY 
TSYRLQEILD GDLDEIISKL IEHDIENNLE EVLGIGASVE EK