Gene Tpet_1058 details

Gene Information

• Locus tag: Tpet_1058
• ID: 5170503
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: +
• Start bp: 1084840
• End bp: 1086666
• Gene Length: 1827 bp
• Protein Length: 608 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640563576
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001244651
• Protein GI: 148270191
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.00967368
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTCTGG ACGAGATCAA GAGAATGAGC TACGATGAGC TGAAAAGACT GGCAGAAGAC 
ATCCGAAAGA AGATCACAGA AGTTGTCTTG AAGAACGGGG GACACCTCGC ATCGAATCTC 
GGAACAATAG AATTGACCCT CGCCCTCTAC AGGGTCTTCG ACCCGAGGGA AGATGCTATT 
ATCTGGGACA CTGGCCACCA GGCTTACACA CACAAAATTC TCACCGGTCG CGATGAACTG 
TTTCACACGA TAAGAACCTT CGGCGGTCTC AGTGGTTTTG TGACGAGAAG AGAATCTCCA 
CTCGACTGGT TTGGAACGGG CCACGCCGGA ACCTCCATAG CCGCGGGCCT TGGTTTCGAA 
AAAGCATTCG AGCTGCTCGG AGAGAAAAGG CACGTTGTGG TCGTCATCGG TGATGGTGCA 
CTCACCTCCG GCATGGCACT CGAGGCACTG AACCAGCTGA AGAATATCAA CTCGAAGATG 
AAGATCATAC TGAACGACAA CGGCATGTCC ATCTCGCCAA ACGTAGGTGG GCTCGCCTAT 
CACCTCTCAA AATTGAGAAC CAGTCCAATC TACCTGAAAG GAAAAAAAGT CCTGAAGGAA 
GTTCTCGAAA AAACAGAGAT CGGGTTCGAA GTCGAAGAAG AAATGAAGTA TCTGAGAGAC 
AGTCTCAAAG GAATGATACA GGGAACCAAC TTCTTTGAAT CCCTCGGATT GAAATACTTC 
GGCCCCTTTG ACGGCCACAA CATAGAGCTA CTGGAAAAAG TTTTCAAAAG AATCAGAGAC 
TACGATTATC CATCGGTTAT TCACGTGGTG ACTAAAAAAG GGAAAGGATT CACCGCCGCA 
GAAGAAGATC CCACAAAGTA TCACAGCGCT CCGCCATCTG AAAAACCGAA AATGCTCTCT 
TACAGTGAAC TCCTGGGATA TACCCTTTCA AGAATAGCGA GAGAAGATAA AAAAATTGTC 
GCCATAACGG CTGCGATGGC TGATGGAACG GGGCTTTCCA TCTTCCAGAA AGAACATCCC 
GATCGCTTCT TCGATCTCGG AATAACGGAG CAGACGTGCG TAACTTTTGG AGCCGCTCTC 
GGTCTTCATG GAATGAAACC TGTGGTCGCC ATATACTCCA CTTTCTTGCA GAGAGCGTAC 
GATCAAATCG TTCACGATGT GGCTCTACAG AACGCTCCCG TTCTCTTTGC AATCGACAAA 
TCCGGAGTGG TGGGAGAAGA CGGCCCCACA CACCATGGTC TGTTCGACAT AAATTATCTG 
CTTCCTGTTC CAAACATGAA AATCATTTCT CCGTCCTCTC CTGAGGAGTT CGTGAGTTCA 
CTCTACACCA TTCTAAAGAA CCTCGATGGG CCTGTTGCCA TTCGATACCC CAAGGAATCC 
TTCTACGGTG AAGTCGAATC CATTCTGGAG AACATGAAAA AGATAGACCT TGGCTGGAAG 
ATATTGAGGA GGGGGAAAGA AGCTGCAATA ATAGCGACCG GAACCATTCT GAACGAAGTT 
TTGAAAATAC CACTGGACGT GACCGTGGTG AACGCCCTCA CGGTGAAACC GCTGGACACA 
GCTGTCCTGA AAGAAATCGC CAGGGATCAC GATATCATTA TCACCGTTGA AGAGGCTATG 
AGAATCGGTG GTTTTGGATC CTTTGTTGCT CAGAGACTTC AAGAAATGGG ATGGCAGGGA 
AAGATCGTTA ATGTGGGTGT CGAAGATCTT TTTGTTCCTC ATGGGGGAAG AAAGGAGCTT 
CTCAGCACGC TGGGGCTGGA TTCGGAGGGA CTCACAAAAA CTGTGCTAAC ATATATTAAG 
GCCAGAAGTA GGGAGGGGAA AGTATGA 

 

Protein sequence

MLLDEIKRMS YDELKRLAED IRKKITEVVL KNGGHLASNL GTIELTLALY RVFDPREDAI 
IWDTGHQAYT HKILTGRDEL FHTIRTFGGL SGFVTRRESP LDWFGTGHAG TSIAAGLGFE 
KAFELLGEKR HVVVVIGDGA LTSGMALEAL NQLKNINSKM KIILNDNGMS ISPNVGGLAY 
HLSKLRTSPI YLKGKKVLKE VLEKTEIGFE VEEEMKYLRD SLKGMIQGTN FFESLGLKYF 
GPFDGHNIEL LEKVFKRIRD YDYPSVIHVV TKKGKGFTAA EEDPTKYHSA PPSEKPKMLS 
YSELLGYTLS RIAREDKKIV AITAAMADGT GLSIFQKEHP DRFFDLGITE QTCVTFGAAL 
GLHGMKPVVA IYSTFLQRAY DQIVHDVALQ NAPVLFAIDK SGVVGEDGPT HHGLFDINYL 
LPVPNMKIIS PSSPEEFVSS LYTILKNLDG PVAIRYPKES FYGEVESILE NMKKIDLGWK 
ILRRGKEAAI IATGTILNEV LKIPLDVTVV NALTVKPLDT AVLKEIARDH DIIITVEEAM 
RIGGFGSFVA QRLQEMGWQG KIVNVGVEDL FVPHGGRKEL LSTLGLDSEG LTKTVLTYIK 
ARSREGKV