| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0836 |
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| Symbol | |
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| ID | 5170260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 848006 |
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| End bp | 851854 |
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| Gene Length | 3849 bp |
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| Protein Length | 1282 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640563355 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001244431 |
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| Protein GI | 148269971 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000934463 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGGAGAA TACTTCTTAT TCTTGTCATG TTGATGTTCA GTGTGTTGTT CTCTGCAGAG
CTCGTAGGGG TACTTCCTAA GATAGAGAAT GATCGAGTGA TCATAAAGAT TCAGGTTTCT
TCACCGGTTG AAGATGTTTC GGCAGAAATG AATTCTTCAA AGACTGTGTT CTCCATTTTC
ATGAAAGGGG TTCAAATGAA GATCAGCAGA TTCATGGTTC CCGTTGGTGT TGGTCCTGTT
GAAGGTGTAC GAGTGGTGAA CGTTGGCAAT GGAGTTATGG TGTCCGCGAG TCTGCTGGTT
CCATTCCCAG GAAGCTACCG TTTAGAAGAC AAGACGATAG TGATGGAATT TCCAAGAAGT
AAGGAAAGAA TCGATGTGTC CTTTGAAAAC ATGCCTTTTG AAGATATGGT AAAGTACCTC
TCTGAGAGAT TGAATCTCAA CGTAATCGTT TCAGATAGTG TCAAAAGTGC AACAACGAGT
TTGAAACTGA ACGATGTCAC ACCCGAAGAT GCGCTGAGAG ACCTTCTCGT TACATTCGGA
GAAGTTGCCT ACGCTTATTT TCCGGATGGG ACTATGTTCA TAGGAAAATA CGAAGAAGTA
TCCGGAAGGT TTCAGAGATT CTGGGGTATA TACAGAGTAG AGAATCAAAC AGTTGCCGAC
AGGATAAAGA GTCTCATTTC TCAGGAAGCC ATGATAGACT ACCTTCCGTC AAAATCTGTT
CTCTTCGTCT ATGGAACTTC GGAAGAACAT GACCTCGTGG CGAGCCTTCT TTCTGTTTCT
CCACCCCTTC AGCAAAAAGA AGTTTCCTTC TCGGTAGATT CAGCGAGAGT GGAAGAACTC
CTGACCGCTC TCAAAAGTGT GTATCAGTTC GAGTATCACC TCTTAAAGCC GGTATCCAGG
GTGATTCTTG TGGGAGATTC TGAGACGATT TCGAAAGTGG AAAGATATAT CAAGATTTTG
GAAACTCGCG AGCAGGTGTC TGTAGAAGAA CAGGTCCAGA TTCCAGCTAA AAAATTCGTC
TTTTATGCTT ACGATCCAGA ATCCGCTGCT TCGCTTATCA CTTTACTCCT CGGAATAGAT
GCTCAGTCTT TCAAGGACAT GAATCTGGTG GTATGTCAGG TGCCGATAGA CAGAGAGCAG
GAATTGGTTG ATTTCATCGC GGAAAACAAC CTGGAGCTCG GTGAGATGTT CTATCTGGAT
ATCAAAAAAG GTGAGGAAAA CTTTCTCAAA GAAACGATAC AGTTTCTTGG AGTACCAGAT
TCGAGGCTGA GGTTTCTCAA CATCGACGGT GAGAATGTAA AAGTCGGTAT CTCAGTTCCA
AAAGCGGTCT ATGAGAAAAT ATCTCCCATT CTGAAAAAAA TGTTGTCACT CAGGAGAAAG
AATTTCATCG TGAAAAGTGT GGAATTGAAA AAGGAGATTC AGCAGGAAAT GTTAGACGCG
ATAACGAGAA TGTACGGGGT TTCTATAGAA AAAATAGGAA ACTTCCTCTT CATAGAGGGA
GCCAATGGTT CCGTTGAAAA CGCTGAAGAA CAACTGGAGA AACTCCAGAG TGAACACACA
CAATTTCTGA AAATTACCTT AAAAGCTGAA AATGTGGAAG ATTTGAAGAG ATTCATGAAG
GAAAAGTACG GTGTTGAATT CGAGTACTTT TCTTCTCTGA AAGTGGCAAT GCTGAGTGGA
AAGGAAGAAG AAAGCGTTCA GAAAGCTGCT GAAGAATTGC AGTTAATTTC TTCGGAGGAA
AGGATCATAA GGTTCGTGAA AAAATCCGAG AATGTACCGA TCGATAAAGC GAAAAGCGTT
GTTTCACAAC TCTACAGTGT ATCCATAGAA GAGTTAGGGA ATGAGCTTGT CGTCATCGGT
GAAAGAGAAG AAGTCGAAAA AGCTGCTGAT CTTCTTCAGA AAATTTTCTC TTCCGAAGTA
GAGATCTCGC GTGACTTTGT GAAGTTGCCC AGCTGGATTG ATGAACAAGA GAAACTCCTC
GAAGTTGTGA AAAACAGCGC CGGGATCACT TACGAAATAC TGGACGGAGT AGTTTACTTT
GAAGGGACAA AGGAGAATGT CGAAAAGGCA AAGGAACTCT TCTCAGACAT AGTGGAAAAA
CTCGGAGAAG TACGCAAAGA AGAGAAAGTG GAATTCCTCG AAGTGGATTC TTCCTTCCCT
GTTGACGAAT TTATAAATCT CTCTAGCAAA CTGTATCCGG ATGCTACCTG TTTCAGTCTC
GATCAATTGG GTCTTCTGGT TCTCAAGGGA TCTTCAGAAG CGGTCGAAGA TCTTTCGAAC
ATGTATCGTT CTTTCTTCGA GAGATACCAA AAGATAGTGA AAGAAAACGT GTTCGATCGA
CTCATGCTAG AGGTTCCGAG CGGTTTTTCC TTCGAGGAAT TCAAGACCTT CCTGGAAGTT
CTCGTTCCAG AAGTCAAACA GGTTGTCTAT CTTGACAAAT TGAACTTGCT CTTGGTGGAA
GTTCCTGTTT CACAATCGGA AAGAGTGAGT AGTCTACTCG ATACGTTCTT GAAAAAAGAA
GAAGCTGTAT CGGAAAAGAA AGCGGTGAAA AGCGTCACCA TACCTTCCGG TGTGAACCCT
GACGAACTTT CTTCTTACTT GAAGAAACTC CTCAGAAATG TCGAGATCAC GGTCTTTCCG
AACATGGGCC AGATGATCGT AGAGGGACCA GAAAACGAGG TGGAAAAAGC TGTAGAACTC
GTAGAAGCGG AAAAAGAAAA GATCGTTTTG AAGGAAAAGA AAGATTACGT AAAGGTTTCT
GATGGTAAGC TGACTATAAA CGCAGAGGAT GTTTCGCTTT ACGATCTTCT CGCAGAAATC
GCCAGTGAAC TTGGAATTTC GGTGATGTTT GTTTCCATTC CTTCGGAAAA GATCACGATG
AAGGCAGATG ATATCACTTG GGAAAAGTTC GTGGATCTGA TCTCTCAGAA CTATGGTTAT
TTGTTTGACA ACAAAAGCGG TGTTTACGTT CTCTCAAAAC CCAAACAGGA TCTTGCAAGG
CGTTACGTTT ACGACGTGCC GCACAATTTC GATCAAATAA AGGCTTTGAT CGAATTCTAC
GGAGGAACGG TTTATGTGGA TTCTCTGAAC AACTTCATGG TGGTAACGGG AATTTCTGAG
ACGATAAAGA AAGAACTGGA CAATATCATA GAAAAATTGA AAAAGCCGAC GAAACAGATA
GAGATATCCG CGAAGATAGT GGATAGATCT TTGATTGACA GACTAAGCAA AGAAGCCGGT
CTCGAATTGA CGGGAGGGAA TGTGAATGTG GGGTCCTCTG GTGCAGGGAT ATCTTTCTCT
GTGACCGACT ACCTTGATTT CGAAAAGATC TTTGGAGGAA TTTTGAACAG CAATCTTTCT
CTCCAGTTCT CAGATCAAAA GACAAACACC CTCGATGACA TTCTTGCGAG TCCCAGAATC
GTCACCACCA GTGGAAAAGA GGCGAGAATA CTGATAGGTG ACAGAATACC GTACGTTACG
GACACCAATG GAGACGGGAC TCCGGAAGTG CAATTCCTCG AGACCGGTAT AGAACTCAAC
ATCACACCGT TTGTACGAAG TGACGACACT ATAGAGCTCG ATCTCTTTGT GAAGGCTAGC
GAACCTGGAA ACTACATAAA TGAAGTGCCT GGAGAGAGAA CACGAGAGAC TCAGACACAC
CTCATCGTGA AGAACGGAAG TACCATAACG ATAGGAGGTC TGATCAGGGA AGTAACGAAT
GTAACAGAGA GCAAACTACC TTTCCTCGGA GATTTACCGG TGATAGGACA GTTCTTCAGA
ACAAAGTCCG AAAATAAGGA AAAACGAGAT CTCATCATAT TCCTCACCGT AAGGGTGGTG
GAACCATGA
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| Protein sequence | MRRILLILVM LMFSVLFSAE LVGVLPKIEN DRVIIKIQVS SPVEDVSAEM NSSKTVFSIF
MKGVQMKISR FMVPVGVGPV EGVRVVNVGN GVMVSASLLV PFPGSYRLED KTIVMEFPRS
KERIDVSFEN MPFEDMVKYL SERLNLNVIV SDSVKSATTS LKLNDVTPED ALRDLLVTFG
EVAYAYFPDG TMFIGKYEEV SGRFQRFWGI YRVENQTVAD RIKSLISQEA MIDYLPSKSV
LFVYGTSEEH DLVASLLSVS PPLQQKEVSF SVDSARVEEL LTALKSVYQF EYHLLKPVSR
VILVGDSETI SKVERYIKIL ETREQVSVEE QVQIPAKKFV FYAYDPESAA SLITLLLGID
AQSFKDMNLV VCQVPIDREQ ELVDFIAENN LELGEMFYLD IKKGEENFLK ETIQFLGVPD
SRLRFLNIDG ENVKVGISVP KAVYEKISPI LKKMLSLRRK NFIVKSVELK KEIQQEMLDA
ITRMYGVSIE KIGNFLFIEG ANGSVENAEE QLEKLQSEHT QFLKITLKAE NVEDLKRFMK
EKYGVEFEYF SSLKVAMLSG KEEESVQKAA EELQLISSEE RIIRFVKKSE NVPIDKAKSV
VSQLYSVSIE ELGNELVVIG EREEVEKAAD LLQKIFSSEV EISRDFVKLP SWIDEQEKLL
EVVKNSAGIT YEILDGVVYF EGTKENVEKA KELFSDIVEK LGEVRKEEKV EFLEVDSSFP
VDEFINLSSK LYPDATCFSL DQLGLLVLKG SSEAVEDLSN MYRSFFERYQ KIVKENVFDR
LMLEVPSGFS FEEFKTFLEV LVPEVKQVVY LDKLNLLLVE VPVSQSERVS SLLDTFLKKE
EAVSEKKAVK SVTIPSGVNP DELSSYLKKL LRNVEITVFP NMGQMIVEGP ENEVEKAVEL
VEAEKEKIVL KEKKDYVKVS DGKLTINAED VSLYDLLAEI ASELGISVMF VSIPSEKITM
KADDITWEKF VDLISQNYGY LFDNKSGVYV LSKPKQDLAR RYVYDVPHNF DQIKALIEFY
GGTVYVDSLN NFMVVTGISE TIKKELDNII EKLKKPTKQI EISAKIVDRS LIDRLSKEAG
LELTGGNVNV GSSGAGISFS VTDYLDFEKI FGGILNSNLS LQFSDQKTNT LDDILASPRI
VTTSGKEARI LIGDRIPYVT DTNGDGTPEV QFLETGIELN ITPFVRSDDT IELDLFVKAS
EPGNYINEVP GERTRETQTH LIVKNGSTIT IGGLIREVTN VTESKLPFLG DLPVIGQFFR
TKSENKEKRD LIIFLTVRVV EP
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