| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0362 |
|---|
| Symbol | |
|---|
| ID | 5171432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 345487 |
|---|
| End bp | 346665 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640562865 |
|---|
| Product | carbamoyl phosphate synthase small subunit |
|---|
| Protein accession | YP_001243966 |
|---|
| Protein GI | 148269506 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0505] Carbamoylphosphate synthase small subunit |
|---|
| TIGRFAM ID | [TIGR01368] carbamoyl-phosphate synthase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0108123 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAAA AAGCACTTCT CGCTTTAGAA GACGGTTCGT TTTTTTTTGG ACAGAGTCTG
GGTGCAGAGG GTGAAACTTT TGGTGAACTG GTCTTCAACA CGGGAATGAC AGGCTATCAG
GAAGTCCTCA CCGATCCCTC CTACACCGGT CAGATCGTCG TCATGACCTA CCCGGAAATA
GGAATCTACG GAGTGAACGA CGAAGACGTA GAATCAGATG GAATAAAAGT TGCCGGTTTT
GTTGTCTACA GAAGCGTGGA TACCCCTTCC AACTGGAGAG CCACCATGTC TTTCCCCGAT
TACTTGAAAA AGTACAACAT CGTGGCCATA GAAGGAGTGG ACACCAGAGC ACTCACCAGG
AAAATTCGAG TGAAAGGTGC TATGAAAGGT GCCATATCGA CCGTTGATCT CGATCCGGAT
TCCCTTGTAA AACGGGTGAA AGAAAGCCCC AGTATCGTTG GAAGGGATTT AGCCGGTCTT
GTTTCACCGA AGGAAGTCAT CGTAGAAAAC CCGGAAGGAG ATTTCTCAGT GGTGGTACTC
GATTCCGGTG TCAAATGGGG TATTCTCAGA GACCTGAAGA GAGTGGGAGC AAAAGTGATG
AGAGTTCCTT ACAGTGTTGA TATAGACGAC ATCAAAAAGC TGAATCCCGA CGGTGTTCTG
ATCTCGAACG GTCCCGGTGA TCCCGCCGCC CTTTTGAAAA CCGTCAGATT GATCAAAGAC
CTTCTGAAAG AAGAAATTCC ACTCGCGGGG ATCTGCCTTG GGCATCAGCT CCTTGGCCTC
GCCGTTGGTG GAAGGACTTA CAAGATGAAA TTCGGTCACA GAGGCATCAA CCATCCCGTT
AAAGATCTGA GAACCGGTCG TGTTCTGATC ACAACGCACA ACCACGGCTT CGCTGTGGAT
CCAAAGAGTT TCGGCCTTCC AGAACTGGGA AGCGAGGATC AGGACGCGAA CGTTCTCACG
AAAAATCTTC AGAAGATATC CGTCCTCGAA GGAATCAGTC CTCAGGGAAT AAAAGTCGAG
ATCACCCACA TCTCCCTGAA CGACGGAACG ATGGAAGGAA TGAGGCTGGT TGATTATCCA
GCCTTTTCTG TTCAATATCA CCCTGAAGCC TCTCCCGGAC CTCACGATGC CAAGTACTTC
TTCGAAGAAT TCAAACGCCT CATAAAGGAG GTAAGGTAA
|
|---|
| Protein sequence | MSKKALLALE DGSFFFGQSL GAEGETFGEL VFNTGMTGYQ EVLTDPSYTG QIVVMTYPEI
GIYGVNDEDV ESDGIKVAGF VVYRSVDTPS NWRATMSFPD YLKKYNIVAI EGVDTRALTR
KIRVKGAMKG AISTVDLDPD SLVKRVKESP SIVGRDLAGL VSPKEVIVEN PEGDFSVVVL
DSGVKWGILR DLKRVGAKVM RVPYSVDIDD IKKLNPDGVL ISNGPGDPAA LLKTVRLIKD
LLKEEIPLAG ICLGHQLLGL AVGGRTYKMK FGHRGINHPV KDLRTGRVLI TTHNHGFAVD
PKSFGLPELG SEDQDANVLT KNLQKISVLE GISPQGIKVE ITHISLNDGT MEGMRLVDYP
AFSVQYHPEA SPGPHDAKYF FEEFKRLIKE VR
|
|---|
| |