Gene Tpen_1677 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_1677 
Symbol 
ID4600929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand+ 
Start bp1624336 
End bp1625379 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content46% 
IMG OID639774450 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_921075 
Protein GI119720580 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.281902 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTTCAA AGATTCTTCA AGGACATAGG GTTAACAGCG GTTTGCTTAA CTATTTTCTT 
AAAAGGCTAT TCATACTACT TTTATCCTTC TTCCTCATCG TCACGATAAA CTGGTTAATT 
CCACGAATGG CTCCTGGAAA TCCTGTCGAC GTATTAATAA GCAGAATGGG TTTAACTGGG 
TTACAGGCTT CAGCGGAGCA AATGAGAAGT TACTTTCTTA AAGCATTTGC CCTAGACAAA 
CCTCTCTGGG AACAGTACAT AAACTTCTGG CTAGGGCTTT TCCAGGGAGA CTTGGGTATC 
AGTGTCTACA GGTTTCCCAC ACCTGTCAGC GAAATAATAA TGGAGGCAAT ACCGTACACT 
GTAGCGCCAG TGGCTCCTGC TCTCCTAGTA TCATGGTATA TTGGAAATAA GCTAGGAGCT 
CTAGCAGCTA AGAAGCGCCT ACTCGACAAC ATACTCGTGC CACTCGCCTA CTACCTTGCT 
AATGCACCGT ACTTTTGGCT AGGAGTAGTA CTCCAGTTTG TGTTCTCCGT AGAGCTCTGC 
AAGTCAACGC CCATATGTCT GCCATCCGGC TTCCCATACT CCAGGGGGCT TACGCCAAGC 
CTCAATGTTA CGTTCTTGTG GGATGCTTTC ATGCACTGGA TACTCCCATT TGCCTCCTAC 
GTACTCGTAC AAATGGGCGG GTGGATGATA GGTATGAGAA ACATGATTAT CTACGAGCTA 
GGCTCCAATT ATGCAAAGTA CATGGAAGAC CTTGGTTTCT CCGATTCTAT GCTGAGCAAG 
TATGTATACA GGCACGCGCT ACTTCCGCAG GTTACCGGGC TAGGAATACA GATAGGCATG 
CTGGTTAGCC TGGGAGTCGC AGTCGAATTT GTTTTCTCGT ACCCAGGGCT CGGATACTAC 
TTAGTGAATG CGATACAAAA CAGGGACTAC TTCCTGACAC AGGGCATTGT ACTTGTAGTG 
ACAATTAGCG TTCTCGTGGC TAACTTCATC ATAGATATCC TCTACGGAGT TCTAGATCCT 
AGGACAAGGT TAACAGAACA GTAG
 
Protein sequence
MTSKILQGHR VNSGLLNYFL KRLFILLLSF FLIVTINWLI PRMAPGNPVD VLISRMGLTG 
LQASAEQMRS YFLKAFALDK PLWEQYINFW LGLFQGDLGI SVYRFPTPVS EIIMEAIPYT 
VAPVAPALLV SWYIGNKLGA LAAKKRLLDN ILVPLAYYLA NAPYFWLGVV LQFVFSVELC 
KSTPICLPSG FPYSRGLTPS LNVTFLWDAF MHWILPFASY VLVQMGGWMI GMRNMIIYEL 
GSNYAKYMED LGFSDSMLSK YVYRHALLPQ VTGLGIQIGM LVSLGVAVEF VFSYPGLGYY 
LVNAIQNRDY FLTQGIVLVV TISVLVANFI IDILYGVLDP RTRLTEQ