Gene Tpen_1320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_1320 
Symbol 
ID4602000 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand- 
Start bp1268072 
End bp1269082 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content66% 
IMG OID639774095 
ProductCRISPR-associated RAMP Cmr4 family protein family protein 
Protein accessionYP_920720 
Protein GI119720225 
COG category[L] Replication, recombination and repair 
COG ID[COG1336] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR02580] CRISPR-associated RAMP protein, Cmr4 family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.215019 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGTTTTTC GGTTTTTTAG CTGTATGGGG GTGTTCGTTG TATCTGACTA CGAGTACGGC 
TACCTTTTGC TCGCCTCCGC GTATACTCCC GTGCACGCCG GTAGTGGGCG TGGCTACGGC 
TTCGTGGACT TGCCTGTTCA GAGGGACTCG CTCGGCTACC CGGAGGTGTG GGGCTCCAGT 
GTTAAGGGCG CGTTGAAGGG TTTCCTGTTG AGGTCCGTGG GCGTCGAGGC TAAGGGGTTT 
TTCGGCTCCG AGCCCGAGGA GTCTCCGACC GTGCCGGGCT TGGCAGTCGT CACGGGTTTG 
TCGTTGCTGG CTGTCCCCGT GCCGAGCGTG CGGAGGGGCA TCGTGTACGT GACTACCCCC 
TACCTGGCGT CCAGGGTCGC CGGGTACGTC GACGTCGTGA AGAGGCTGCG CGGCTTCGAG 
GGGGTGGAGT CGCTGGCCTT CCCGCTGGAG GCCTTCGAGA AAGCCCTGGT GGAGGTCGTG 
GAGGCGGGGT CTAGCCTGGG CGAGGGTGAG GCGGCGGCGT CGAAGGGGGT TGCGGTTGAC 
GGCGCCGTGT ACGTCTCGGG GAGCCGCGTC AGGGTGTCCC GGGAGCTGGA GTTCCCCGGG 
GGGCTCGACG ACGCGCTTCG CTCTCTGAAC GTGCTGTACT CCTACAAGAA GGTGTTCGGG 
AACCTCGTCG TCCTCCCGGA CGGGGTCGGC CGGAGCGTGG TGAACGGGGC GCTCCAGGTT 
GTCTACAGGA ACAGGCTCAG CGACGCCACG AAGACCGTGG AGAGGGGGGC GCTGTGGAGC 
GAGGAGTACC TCCCGTACGG CTCCCTGCTC GTAGGCGCGG TCATGGTGAA GGACTTCGAG 
AAGCTGAGGG GGCTCCTGGA GGCCGGGCGG TACGAGGCCC AGCTCAGGCT CTACGAGTCC 
GCGTGGGGCA AGCTGAGGAG CATTCTGGGC GCGATGAACG GGTACCTGGT CGTCGGGGGC 
AAGGAGACCG TCGGCAAGGG GGTCTTGAGG GTCGCGATCG CGAGGGGGTG A
 
Protein sequence
MVFRFFSCMG VFVVSDYEYG YLLLASAYTP VHAGSGRGYG FVDLPVQRDS LGYPEVWGSS 
VKGALKGFLL RSVGVEAKGF FGSEPEESPT VPGLAVVTGL SLLAVPVPSV RRGIVYVTTP 
YLASRVAGYV DVVKRLRGFE GVESLAFPLE AFEKALVEVV EAGSSLGEGE AAASKGVAVD 
GAVYVSGSRV RVSRELEFPG GLDDALRSLN VLYSYKKVFG NLVVLPDGVG RSVVNGALQV 
VYRNRLSDAT KTVERGALWS EEYLPYGSLL VGAVMVKDFE KLRGLLEAGR YEAQLRLYES 
AWGKLRSILG AMNGYLVVGG KETVGKGVLR VAIARG