| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1288 |
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| Symbol | |
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| ID | 4600596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermofilum pendens Hrk 5 |
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| Kingdom | Archaea |
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| Replicon accession | NC_008698 |
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| Strand | + |
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| Start bp | 1229619 |
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| End bp | 1230542 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639774064 |
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| Product | CRISPR-associated Csm3 family protein |
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| Protein accession | YP_920689 |
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| Protein GI | 119720194 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1337] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
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| TIGRFAM ID | [TIGR02581] CRISPR-associated RAMP protein, SSO1426 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0685165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGCCAGG TCCCGTGGTC CTCGCACAGG GTCCTCCTCA GGGAGGCAGT CTTCAGGGGC
TACCTCGTCG CCGAGTCTCC GCTGAGGGTG GGCGCTGGCA GGGAGGCGCC GCTGGGCTCC
CCGGTGGACC TCTCGGTCCT CAGGGTTAGG CTTGGCGGTA AAAGCGTCCC CTACATACCC
GGCAGTAGCC TGAAGGGTGT GTTCAGGAGC TTCTCCCAGT CCCTCGCAGT GGCGAAGGGG
CTAAGCGTGT GCAGCGGGCT GAGCGGGGAG ACGTGCATGG ACTACGAGGA CCCGTCGCTG
GGCGGCGAGA AGTTGCTGAG CTACTTGCAG GGGCTGATGA GGGAGGGGCA CAGCCTGGAA
GCCGTCAGGC TGTTCCACGA GAAGGCCTGC CTGATGTGCA AGGTCTTCGG CGCCCCCTCG
TTCTCCGGGC ACGTCGAGTT CAGCGACGCC TACCCCGTCG ACGAGAAGGG GGGCGTCGTC
GACGTCTCCA CCGGGGTGAG GACGGGCATA GCGATAAACA GGAGGACGGG CGCCGTCTAC
GAGAGGGCCC TCTACCAGGT CGAGTACGTC GAGCCGGGCG CGAGGTTCAG GTTCGAGGCT
AGGACTACGA ACCTCCCCAA CTACGCGCTC GGGCTCCTCT CCGCCGTCAT CAGGATGATG
AACGAGGGCT GGGTCAGGGT GGGCGGCTTC AAGACGAGGG GCTTCGGAGA GGTGCGCGTG
GAGGGCCTGG AGTTCGCGGC TAGGGGCGCG ACTGTCCGCG GCTCGGTGCT GGTGAAGCTC
GACGACTACG ACTCGGACGT CGACCTCTCG GGCCTCGCCG AGGCCAGGGA CGGGTGGCTA
AGGGCCTCCG GGGACTCCGC CTGGAAGGCG CTGGCTAAGC TCGAGGAGGT GTGGTCCAAT
GCAAGCTTCG GGAAGCGCGG TTAG
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| Protein sequence | MSQVPWSSHR VLLREAVFRG YLVAESPLRV GAGREAPLGS PVDLSVLRVR LGGKSVPYIP
GSSLKGVFRS FSQSLAVAKG LSVCSGLSGE TCMDYEDPSL GGEKLLSYLQ GLMREGHSLE
AVRLFHEKAC LMCKVFGAPS FSGHVEFSDA YPVDEKGGVV DVSTGVRTGI AINRRTGAVY
ERALYQVEYV EPGARFRFEA RTTNLPNYAL GLLSAVIRMM NEGWVRVGGF KTRGFGEVRV
EGLEFAARGA TVRGSVLVKL DDYDSDVDLS GLAEARDGWL RASGDSAWKA LAKLEEVWSN
ASFGKRG
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