Gene Tpen_1248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpen_1248 
Symbol 
ID4600543 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermofilum pendens Hrk 5 
KingdomArchaea 
Replicon accessionNC_008698 
Strand+ 
Start bp1183989 
End bp1184987 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content64% 
IMG OID639774024 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_920649 
Protein GI119720154 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGCGT TGGAGGACAG GCAGGTGCTC TCGGCTAGGG GCGTAACCGT CAGGTTCTAC 
ACGTACGCCG GCGTCGTCCA CGCGGTCACG GACGCCTACC TCGACGTCTA CGAGGGCGAG 
AGCGTAGCCC TGGTGGGCGA GACGGGTAGC GGTAAGTCCG TGTTCACGAA GGCGCTTACA 
GGCCTCATAG ACCCCCCGGG GCGCATAGAG TCCGGGAGCG TTCTCTTCAG GAGGCGGGAC 
GGCAGGGTGG TCGACCTGCT GAAGCTTTCC CCGGAGGAGG TCCGGGAGAT AAGGGGCGAC 
GAGATATCCT ACGTGTTCCA GGACCCTTCG AGCGCGCTCG ACCCCCTCTA CACGGCGGGG 
GACCACATAG CCGAGACTAT AACGGAGCAC AGAGGCGTCC CCAAGGGGGA CGCGCTCAGG 
GAGGCCGTCT CCCTCCTAAG GGACGTCATG ATCCCGAACC CGGAGGTCAG GGTGAAGAAC 
TACCCGCACG AGCTGAGCGG CGGGATGAGG CAGAGGGTAG TCATAGCCAC CGCTATTGCG 
AACAAGCCGC GCCTACTCAT AGCGGACGAG CCCACGACAA ACCTCGACGT GACTGTCCAG 
GCCCAGATAC TCGACCTCCT GAAGGACCTC AGGTCCAAGT ACGGTATGAG CCTGCTACTC 
ATAACCCACA ACCTGGGCGT CGTCGCCGAG ACGGCGGACA GGGTCTACGT CATGTACGGC 
GGGAGGATAG CGGAGACGGC GGACGTGTAC ACGGTGTTCG AGTCGCCGGC ACACCCCTAC 
ACGCAGCTCC TCCTCCGCTC CGTCCCGAAC CCGCTGAAAA AGATCGAGCG CCTCGAGTCG 
ATCCCGGGGA CTGTCCCCAA CCTGATAGAC ATGAAGCCGG GGTGCCCGTT CGCTCCGAGG 
TGCCCCTTCG CCATGGAGGT TTGCAGCAGG GAGGACCCCC CGCGGGTAGA CCTGGGTGGG 
GGGCACGTCG TCCACTGCTG GTTGCACGCT AAGAGGTGA
 
Protein sequence
MSALEDRQVL SARGVTVRFY TYAGVVHAVT DAYLDVYEGE SVALVGETGS GKSVFTKALT 
GLIDPPGRIE SGSVLFRRRD GRVVDLLKLS PEEVREIRGD EISYVFQDPS SALDPLYTAG 
DHIAETITEH RGVPKGDALR EAVSLLRDVM IPNPEVRVKN YPHELSGGMR QRVVIATAIA 
NKPRLLIADE PTTNLDVTVQ AQILDLLKDL RSKYGMSLLL ITHNLGVVAE TADRVYVMYG 
GRIAETADVY TVFESPAHPY TQLLLRSVPN PLKKIERLES IPGTVPNLID MKPGCPFAPR 
CPFAMEVCSR EDPPRVDLGG GHVVHCWLHA KR