| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_1221 |
|---|
| Symbol | |
|---|
| ID | 4601718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | + |
|---|
| Start bp | 1158123 |
|---|
| End bp | 1159310 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639773997 |
|---|
| Product | zinc finger, RanBP2-type |
|---|
| Protein accession | YP_920622 |
|---|
| Protein GI | 119720127 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.420312 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGGGAAG TTAGGCTCTA CCTCTCCAGG GACAAGCTCT CCTGGCTTAT GTACTCCTCG
TTCTTCTTAT CGTTGCTTCT CGTCAAGCCC TCCAGGAGAC CCCTACTCGC GGTCCACTAC
GTCCACGTAG ACTCCCCGTC TCTCTACGGG CTCTACTACA GGTTCCTGAG GGAGGAGGGT
CTCCGGGACG CGGACGAGGC TGTGTTCAGG GGCGTCAAAG CCTTGCCCTG CGTCGTGGTC
GACGACCAGG TAGTCATCGA GGGGAGGTAC GTCTTCGCGA GAGGAGCTCT AAGGTTGCTC
AAGTGGTACC CCTTTATAGA CGTTCTCGCG TTCGCCGCGT CCTCCGCCCT CCTCGTGGCA
ACGGTGCTTG GCTCAACGTA CGCGGCGGTC CGCCTCTTCC CCGGGGCTCC GGGAGGGCTC
TTGGCGGTCC TCGCGCTCCT AGCGGCTTCC GTAGCGTTCG CCGTGGCTTT CTACAACGTG
TACGTAGCGG CTCTGAGGGG GCTTGTAAGG GTATTCCTGG GAGCTCTCAG CGTGGACCCC
GGAAGGGTAG GCGTGCCCCT AGACTTCGAG AAGCCGCGGG GGTGCGGAGA CGTGCTCGCA
GTAGAGGCGA GGGCGCTCGG ACTTTCGGCT AACGCTTTCG ACGCGGTCGA CAAGGCTAGG
ACTAGCATAC TGCTGGGTAG GCACGACTGG CTCAGGTGCT TCCTCGCCGC GGTCGACATC
GCGCTGGGAC GGGTTAAAGG CCCCGAGGAG CTCCGGAGGG AGCTCGAGCA CTCCCATGAG
CTTGCACGCT CCCTCAAGGC CTCCTTAGAG AAGAAGGTCT CGAGCATCGG CGGGTGGGTC
TGCCCGTCCT GCGGCGCGCT GAACCCTCCT GGCAACGCTA CTTGCAGGGC CTGCGGGTCG
ACGAGGCCTA TCGCTGGGCT CGAGGGGCTG GGGCCCGTGC ACGTGGATAT CCTGAGGATC
CTCTACTCCA TGGGCGGAGA GGCGACGCAC GGCGCGCTAC TGTCTCGCCT GGGCTACGAG
AAGCCCCAGG TCGTAGACGC TTTGAGGGCT CTCTTCGCCC GCAAGCTCAT ATCGCCCGCG
CTTATGCAGT ACGAGGGGAG GCCCGTGCTG GGCTACCGCC TGACAGGCGA GGGGGCGAAG
GTGGCCTCCG TGCTGGCGCG GGAGGCTTCC GCTCGCAGAG CGCTCTAA
|
|---|
| Protein sequence | MREVRLYLSR DKLSWLMYSS FFLSLLLVKP SRRPLLAVHY VHVDSPSLYG LYYRFLREEG
LRDADEAVFR GVKALPCVVV DDQVVIEGRY VFARGALRLL KWYPFIDVLA FAASSALLVA
TVLGSTYAAV RLFPGAPGGL LAVLALLAAS VAFAVAFYNV YVAALRGLVR VFLGALSVDP
GRVGVPLDFE KPRGCGDVLA VEARALGLSA NAFDAVDKAR TSILLGRHDW LRCFLAAVDI
ALGRVKGPEE LRRELEHSHE LARSLKASLE KKVSSIGGWV CPSCGALNPP GNATCRACGS
TRPIAGLEGL GPVHVDILRI LYSMGGEATH GALLSRLGYE KPQVVDALRA LFARKLISPA
LMQYEGRPVL GYRLTGEGAK VASVLAREAS ARRAL
|
|---|
| |