| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0912 |
|---|
| Symbol | |
|---|
| ID | 4602125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 859400 |
|---|
| End bp | 860170 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639773691 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_920316 |
|---|
| Protein GI | 119719821 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGGCG AAAGCCTAGG CGTGCGTCTA GCGGCCCTTG TTCCCGTCCT TTACGTGGCT
TCCACGTTCT ACTTCCCCAT AGTGCTCATG CTCTTCGAGA GCCTTAGGGG CGGGGGCGTC
TCCGTCTACT ACCAGGTCGT CACGAACGAG GACTACCTGG CCATAATCGC CTACTCGGGG
CTGATAGCAG TCATCGTTAC CGCGGTCACT CTGCTCGCAT CCCTCCCGGT AGCGTACTAC
CTCGCCTTCT ACGTTGAAAG CGAGGAGGGC AAGAGTAAGT TGCTCGTCGC GTTCACTCTT
CCCATGCTGG TCAATTTCCT GCTACGCGCC TACGCCTTGA TGAACATTTT CTCGCTTTTA
GGGTTGGCGA ACAGCTTCCA GGCGGTGGTT ATAGGCATGG TCTACGAGTA CTTCCCCCTT
ATGCTGCTAC CGGTGTACTC GACGTTCGAG AGGGTCGAGA GGAGGCTCCT CGAAGCCGCG
GAGACTCTGG GCGCGAAGCC CCACCAGGCT GTGCTCAGGG TGCTCGTACC GGTCTCGGCG
CCCGGGATAC TCTCTGGAGT TACGCTCGTG TTCCTCATGG CGTTCACCGA GTTCGTGGTG
CCAGCGATGC TTGGAGGAGT CTACGGCTAC ACAGTCGGGT ACCTTGTGTG GGACTTGTTC
CTGAAGTACA GGAACTGGGC CGCGGGCAGC GCGCTAGCCC TGATCATAAC CGCGGCGTCC
TTGCTGGCGG TATACGCGTA CATGAGGTGG GGTGCGGAAC TTGAAGCTTA A
|
|---|
| Protein sequence | MRGESLGVRL AALVPVLYVA STFYFPIVLM LFESLRGGGV SVYYQVVTNE DYLAIIAYSG
LIAVIVTAVT LLASLPVAYY LAFYVESEEG KSKLLVAFTL PMLVNFLLRA YALMNIFSLL
GLANSFQAVV IGMVYEYFPL MLLPVYSTFE RVERRLLEAA ETLGAKPHQA VLRVLVPVSA
PGILSGVTLV FLMAFTEFVV PAMLGGVYGY TVGYLVWDLF LKYRNWAAGS ALALIITAAS
LLAVYAYMRW GAELEA
|
|---|
| |