| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpen_0199 |
|---|
| Symbol | |
|---|
| ID | 4600808 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermofilum pendens Hrk 5 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008698 |
|---|
| Strand | - |
|---|
| Start bp | 178919 |
|---|
| End bp | 179647 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639772953 |
|---|
| Product | TatD-related deoxyribonuclease |
|---|
| Protein accession | YP_919612 |
|---|
| Protein GI | 119719117 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0084] Mg-dependent DNase |
|---|
| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTAG TGGACGTCCA CATTCATCTA GCAGAGTTCA CTAGGGAGAA AATAGAGGAG
TTTGTTTCCC GCGGCTACAT ACTCGTAGGC GTAGCCGAGG ACTACGAAAC CTCGCTGAAA
GTGCTTGAAC TGAGGGATTC CTACCCTGAA AACGTTAAAG CATGCGTCGG AATCCACCCG
TGGAGCCTGC GCAACCTCGA AGACTACACC CGCGAGCTAG AGCTAGTGTC CCAGCTGTTA
CCGGATGCCG ACTGCGTAGG CGAGGTTGGT CTCGACAAGA AGTTTGTACC AGAAACGTTC
CACCAGCAGC TGGCAGTGTT TAGAGAGCTC GCCGGAAGAG CCGTCGAGAG GGGGGTGCCT
CTAAACGTGC ATTCTGCTGG AGCCTGGAGA GAAGTTCTCG AGGTTCTCGG GGAGCTCGGT
GCCAAGAAGG TAGTACTCCA CTGGTGGACT GGACCTCTCA ACCTGCTACT GGAGCTTTCG
CGGAGGGGGT ACTTCGTAAG TGTGAACGCC GCCCTGAAAG TACAAGAGAA ATCCAGGGTG
ATAGCCAGAG AGGCCCCTCT TGATGCGCTC TTAACGGAAA GCGACGGTCC ATACGAGTAC
AGGGGGCTGT CGCTCAGCCC AAGCCTCATA CCGGAGGCGC TCCAAATCAT CGCGCAGATT
AAAGGCTTAG CCGTTGACGA GCTAGAGAGA GCAATCTACC GAAACTTTAC GCGCGTCTTC
ACGGCCTAA
|
|---|
| Protein sequence | MTVVDVHIHL AEFTREKIEE FVSRGYILVG VAEDYETSLK VLELRDSYPE NVKACVGIHP
WSLRNLEDYT RELELVSQLL PDADCVGEVG LDKKFVPETF HQQLAVFREL AGRAVERGVP
LNVHSAGAWR EVLEVLGELG AKKVVLHWWT GPLNLLLELS RRGYFVSVNA ALKVQEKSRV
IAREAPLDAL LTESDGPYEY RGLSLSPSLI PEALQIIAQI KGLAVDELER AIYRNFTRVF
TA
|
|---|
| |