| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_3852 |
|---|
| Symbol | |
|---|
| ID | 9158032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 3976392 |
|---|
| End bp | 3977249 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | |
|---|
| Product | 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta- chole st-24-enoyl-CoAhydratase |
|---|
| Protein accession | YP_003648766 |
|---|
| Protein GI | 296141523 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATCG ATCCGTCCGT CGCGATCGGC GCCGACCTCG GTACCGCCGA GTTCTCATGG
AACACCTCCG ACGTCCTGCT CTACCAGCTT GCCCTCGGCG CGGGTGCCGA CCCGCTCTCC
GCCCGCGAAC TGCGGTACGC CACCGAGAAG GACACCGTGG TGCTGCCCAG TTTCGCGACC
GTCGCACAGA ACTTCCACGC CACCGAGCCA CCGAAGGTCT CGTTTCCCGG TATCGAGATC
GATCTCGCGA AGGTGGTGCA CGGCAGCCAG TCCGTCACGG CGCACCGACC GCTGCCCACC
AGCGGGCGTG CCACGGCGCG CACCCGGATC ATCGATGTGC ACGACAAGGG CAAGGCCGCG
GTGATCTGGC AGGAGACCGA GGTGGTCGAC GAGGCCGGCG AGCCGCTGTG GACCTCCCGA
TCATCGATAT TCGCCCGCGG CGAGGGCGGA TTCGGCGGCG ATCGCGGGCC GTCCGAGAAG
ATCGAGCTGC CCGATCGAGC CGCCGATGCG ATCGTGGACG TGCCCACGAT CGGCCAGCAG
GCCCTGATCT ACCGGCTATG CGGCGACCGG AATCCGCTGC ACTCCGATCC CGCATTCGCG
AAGGCCGCCG GCTTCGACGC CCCGATCCTG CACGGTCTGT GCACGTACGG GATCGTCGCG
AAGGCCGTGA CCGACGCCGT GCTCGACGGC GACGCCGCGA AGGTGGGATC GTGGTCGGCG
AAGTTCGCCG GCATCATGCT GCCGGGCGAG ACCCTACGCG TGCGGATCTG GCGCGCCGAC
GACCGACACC TGGTGACCGC GGAATCGGTG GAACGCGGTG CACCGGTGCT CTCCGACGCG
GTCTTCACCG CCCGCTAG
|
|---|
| Protein sequence | MPIDPSVAIG ADLGTAEFSW NTSDVLLYQL ALGAGADPLS ARELRYATEK DTVVLPSFAT
VAQNFHATEP PKVSFPGIEI DLAKVVHGSQ SVTAHRPLPT SGRATARTRI IDVHDKGKAA
VIWQETEVVD EAGEPLWTSR SSIFARGEGG FGGDRGPSEK IELPDRAADA IVDVPTIGQQ
ALIYRLCGDR NPLHSDPAFA KAAGFDAPIL HGLCTYGIVA KAVTDAVLDG DAAKVGSWSA
KFAGIMLPGE TLRVRIWRAD DRHLVTAESV ERGAPVLSDA VFTAR
|
|---|
| |