Gene Tpau_3493 details

Gene Information

• Locus tag: Tpau_3493
• ID: 9157668
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Tsukamurella paurometabola DSM 20162
• Kingdom: Bacteria
• Replicon accession: NC_014158
• Strand: +
• Start bp: 3606172
• End bp: 3606873
• Gene Length: 702 bp
• Protein Length: 233 aa
• Translation table: 11
• GC content: 70%
• Product: MspA family protein
• Protein accession: YP_003648411
• Protein GI: 296141168

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACACGGC GCACCGGCCT TCTCCCGCTC CTCATCGCGC TCACACTGGC ATCGCCGGGC 
CCGGGCCAGG CGAACGCCGC ACCCGGTCGC GATCTGGGAA GCGCGACCGC ACATCAGAGG 
ATCGGCGGCG TCACCGTCAC CCTCTCCCTC ACCAACCACT TCTCGACCGC CGCGCCCGCG 
ATGGTGGCGC TTCCCAGCAC GCGCAACGCC TGGGTGTCCG GGGCTCTGGC GGTGAAGGTC 
GACCGGAGCG GAACCGCACC GATCTCCGGC ACACTGGTCG CCGGGTACCT GATCGGGTGC 
CAGGCCGATA TCGGTACCGC AACCGCTTCT CTCACGGCCA ACGTCGACTC GGGGGCGCAA 
TGGACGGATG GCAGAGGCTC GATCCGGCCG ACTGCCACCG CACGCACGGG AGGCACCGTC 
GCGCTCGCGA CAGGCACGGT GGGCGCCCAG ATCCTCACCT ACGACCCGCC GACCGCACCC 
CGCGCGGGCG CCGAGGTGGT GCCCACCGCT CCGTGGGGTG CCGCGAGCCC GGGCTACTTC 
TTCTTCGGGC CGACGGGCTC GCTGACGTAT CAGGATCAGA CGATCGGCGT GGACGGGTGT 
CTGGGGCGGG CGCAGGCGAA ATTCTTCGCC GTAGCCGCCG TCCGGGTCGG CAACTCCGAG 
GTGAATCTCA ATCTTTGGGG AAAGACCTTC GACCTGACAT GA 

 

Protein sequence

MTRRTGLLPL LIALTLASPG PGQANAAPGR DLGSATAHQR IGGVTVTLSL TNHFSTAAPA 
MVALPSTRNA WVSGALAVKV DRSGTAPISG TLVAGYLIGC QADIGTATAS LTANVDSGAQ 
WTDGRGSIRP TATARTGGTV ALATGTVGAQ ILTYDPPTAP RAGAEVVPTA PWGAASPGYF 
FFGPTGSLTY QDQTIGVDGC LGRAQAKFFA VAAVRVGNSE VNLNLWGKTF DLT