Gene Tpau_3279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpau_3279 
Symbol 
ID9157453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTsukamurella paurometabola DSM 20162 
KingdomBacteria 
Replicon accessionNC_014158 
Strand- 
Start bp3376181 
End bp3376900 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content66% 
IMG OID 
ProductMspA family protein 
Protein accessionYP_003648203 
Protein GI296140960 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.340811 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCTCGA CTCGTATTCG CAAGGCATCG ATCGGCGCGC TGGCGGCAGC GGCGGTGATC 
GGCCTGGTCG CGCCGGTGGC GACCGCGGGA GCAGATACGG TGATCCCACT GCGCAACGCG 
ACCTCTAGTA ACAAGATCGG ATCGGGCGGT TCGATCACCG TTACCGTCAA GCAGCAGAAG 
GCACGGCTCT CGCCGGGGAT GGTCGCGCTG CCCACCACCC GCAACGCGTG GGTGTCGGGC 
GTGGTCAGCG CCAAGATCGA TGGAGCGGAC CCGAGCGGCG GTTCCATCGA GGCCGGGTAC 
GCGGTCGGAT GCCAGATTGA CGTCGGGAGC GCGAGCATCA ACGTCGGGGC CGAGGCCGGC 
GCGAACAACG ACAGCGGCAA CATCATCGAC AGCACCGGAT ATGTGGGTGC GCCGTCCGTG 
AAGGGTACGA CCGGTGGCTC GCTCTCCCTG GCGGCGGGTT CGATCGGTAC CCAGTCGCTT 
ACGTACGACC GGGCTACCTG GCCCAAGCCG GGTGACGAGG TCGCATCGGA CTGGTACGCC 
CCCGCCACCG ATTTTGCTTT CGATGGCGCC ACCGGCAGCT TCACCTACAC CGACCAGACG 
ATCGGTGTTG ACGGCTGCGC CGGCTATGCC CAGGCCCGTC TCTACGTGAT CGTCAAGGGC 
ACCGTCGGTA ATTCGAAGGG CCGTGTGGTC CTCTGGGGTG ACACCTTCAC CCTCGGCTGA
 
Protein sequence
MASTRIRKAS IGALAAAAVI GLVAPVATAG ADTVIPLRNA TSSNKIGSGG SITVTVKQQK 
ARLSPGMVAL PTTRNAWVSG VVSAKIDGAD PSGGSIEAGY AVGCQIDVGS ASINVGAEAG 
ANNDSGNIID STGYVGAPSV KGTTGGSLSL AAGSIGTQSL TYDRATWPKP GDEVASDWYA 
PATDFAFDGA TGSFTYTDQT IGVDGCAGYA QARLYVIVKG TVGNSKGRVV LWGDTFTLG