| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_1892 |
|---|
| Symbol | |
|---|
| ID | 9156042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 1978096 |
|---|
| End bp | 1979169 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_003646844 |
|---|
| Protein GI | 296139601 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACA AGATCGCGCC GGCCTCCGAT GCCGGTACCT CCTATCCGCT GCTCGCCGCA
GCCGCCGGGC AACCTCCGGC GCGGCGCCCG GTGTGGTTCA TGCGGCAGGC CGGCCGGTCG
CTTCCCGAGT ACCGCAAGGT CCGGGAAGGC GTCGGGATGC TGCAGTCCTG TTTCATGCCC
GAGCTGGTCT CCGAGATCAC GCTGCAGCCC GTGCGGCGGC ACCGCACCGA CGCCGCGATC
CTGTTCTCCG ACATCGTGGT TCCGCTCAAA GCGGCCGGTA TCGACCTGGA CATCGTGAGC
GGCATCGGCC CGGTCATCGA GCAACCCGTG CGCGATGCCG CGGCGGTCGC GGCGATGCCG
TCGCTCGATG CGGAGCAGGT GGAGCCGGTG GCCGAGGCAG TGCGGATGCT GCGCACCGAG
TTGCCCGATG GGGTCGCCCT GATCGGCTTC GCCGGTGCGC CGTTCACTCT CGCCTCCTAC
CTGGTCGAGG GCGGGCCGAG TCGCAATCAC GAGCGCACCA AGGCGCTCAT GTACACCGAT
CCCACCACCT GGCACGCGCT GCTCGACCAG CTCGCGGACA TCGCGATCAC GTTCCTGTCC
GTGCAGGCGA ACGCCGGGGT GCAGGCCTTC CAGCTGTTCG ACTCGTGGGC GGGCGCACTA
TCGCTGGCCG ACTACCGCGA GTACGTGCTG CCGCACTCGG CCCGCGTCTT CGCCGCCCTC
CGCGAAACCG GCACCGCCCT GCCCGGATTC CACTTCGGTG TGGGTACCGG CGAGTTGCTC
GGCGCGATGG GCGAGGCCGG AGCAGATGTG GTCGGTGTCG ATTGGCGCGT CCCGCTCGAC
GAGGCCGCAC GCCGCGTCGG TCCCGGAAAG GCGCTGCAAG GCAACCTCGA TCCGGCGGCA
CTCGCCTCCT CGTGGGAGAT GGTCGAAGCG CAGGTGCGAC GCGTGTGCGC CGATGCCGAC
GCCGCCGTCG CAGCCGGCGC CACCGGTCAC GTCTTCAATC TCGGGCACGG CGTCCTCCCG
TCGACCGATC CCGAGGTCCT TACCCGCGTC GTCGAATTGG TGCACTCGCT ATGA
|
|---|
| Protein sequence | MSDKIAPASD AGTSYPLLAA AAGQPPARRP VWFMRQAGRS LPEYRKVREG VGMLQSCFMP
ELVSEITLQP VRRHRTDAAI LFSDIVVPLK AAGIDLDIVS GIGPVIEQPV RDAAAVAAMP
SLDAEQVEPV AEAVRMLRTE LPDGVALIGF AGAPFTLASY LVEGGPSRNH ERTKALMYTD
PTTWHALLDQ LADIAITFLS VQANAGVQAF QLFDSWAGAL SLADYREYVL PHSARVFAAL
RETGTALPGF HFGVGTGELL GAMGEAGADV VGVDWRVPLD EAARRVGPGK ALQGNLDPAA
LASSWEMVEA QVRRVCADAD AAVAAGATGH VFNLGHGVLP STDPEVLTRV VELVHSL
|
|---|
| |