Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tneu_0567 |
Symbol | |
ID | 6165635 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermoproteus neutrophilus V24Sta |
Kingdom | Archaea |
Replicon accession | NC_010525 |
Strand | + |
Start bp | 519949 |
End bp | 520737 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641667720 |
Product | CRISPR-associated RAMP Cmr6 family protein |
Protein accession | YP_001793955 |
Protein GI | 171185036 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1604] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
TIGRFAM ID | [TIGR01898] CRISPR-associated RAMP protein, Cmr6 family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.123695 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00248457 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAGAGGC CGAAGAAGAG GGAGGAAAGG GAGGTAGACT ACGGCAAGTA CTTCTCAAGC TGCGCAGGCG ACTACAACGT GGTGTCCTGC GTCAACCTGG CGTTTCTAGA GGCTTCTAGA GACCTGGCGA GGCAGAACAT CAGGCTCAGG ATCCCCGAGT TCTCGCGGTG GGCCGTCTTA ACGCTCCACC AGAGGCCGCC GCAGATGTGG GACCAGGTCA AGCGCTACCT CGAGCTGGTC TACGCGGCGG CCAGAGGGGC GTTTCAAAAC GTCTTCAAGT TCGAGTTCTC CCTAGAGACC CCGCTCACTA TACACACCAG ATGGCCCTAC CTCCCCCTGG AGATAGGCAT AGCGTGGCAC CCCATCCTCA ACGTGCCCTA CATCCCGGCG AGCTCCCTCA AGGGAGCCCT CAGGGCGGCC GCGCCCGAGC CCGTCTGCGA CTTCACCAAG GCGGAGCTCT TCGGCACCGC CCAGGAGGAG GGGCTGTTGG TGGTCTTCGA CGCGTACCCC ACCGGCGGCA AGGCGGTGAG GCCAGACGTG GTGACGCCCC ACTACAGAGA GGTGGAGGGC GAGATAGCGG AGACTCAGGC GAGCCCCGTC CCCCTCGTCT TCCCCACCGT CCCCCCGGGC ACAAAGTTCC AGTTCATGGT GGGAATTCTG CCGAGAGACG AAAAGAGGGA GGTTGACTAT AAGAAGTGCG AGATGGAGTT GTTCGACGCA GTGAAGAAGA CGCTGGTGAG GGGACTGGGC GCGAAGACCG CAGTAGGGTA CGGCGTCTTC AAAATTTAA
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Protein sequence | MKRPKKREER EVDYGKYFSS CAGDYNVVSC VNLAFLEASR DLARQNIRLR IPEFSRWAVL TLHQRPPQMW DQVKRYLELV YAAARGAFQN VFKFEFSLET PLTIHTRWPY LPLEIGIAWH PILNVPYIPA SSLKGALRAA APEPVCDFTK AELFGTAQEE GLLVVFDAYP TGGKAVRPDV VTPHYREVEG EIAETQASPV PLVFPTVPPG TKFQFMVGIL PRDEKREVDY KKCEMELFDA VKKTLVRGLG AKTAVGYGVF KI
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