Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tneu_0423 |
Symbol | sdhA |
ID | 6166223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermoproteus neutrophilus V24Sta |
Kingdom | Archaea |
Replicon accession | NC_010525 |
Strand | + |
Start bp | 382639 |
End bp | 384366 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641667581 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_001793817 |
Protein GI | 171184898 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.102696 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0264935 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTAC TTACATATGA CGTGGTGGTG GTGGGCAGCG GCCTTGCCGG CTTGAGGGCC GCGGTGGCCG CCGCCGCCCG GGGGGCCTCG GTGGCCGTTG TCACCAAGAC CTCGGGCCCC CGGTCCCACA GCATCTCCGC CGAGGGGGGG ATGGCCGCGG TGGTGCACCC GGAGAAGACC GGCGACAGCC CGGAGCTCCA CGCCTACGAC ACAGTGAAGG GCGGGGACTT CCTGGTGGAT CAGGAGGCGG CTATGGTTCT GGCGAGGGAG GCCCCCGCCG AGGTTAAGTT CCTGGACTCC ATCGGGGTTC CCTGGAGCAG AGACCCCGAC GGCAGCTACA GCTTGAGGAT GTTCGGCGGT ATGTCTAAGC CTAGGACTGT GTTTGCCAAG GACAAGACGG GGTTCTACAT AATGAGCGCG CTGTATAGAC ACGCCCGGTC CTTCCACAAC ATCCACTTCT ACGAGGAGCA CATCGTCACG AGGCTGGTGG TGAAAAACGA CGTCTTCTAC GGCCTGGTGG CGCTGGACAT GAGGAGGGGG GAGCTGGTGG GGTTCGTGGC CAAGGCTGGG GTCATCGCGG CGGGGGGCGC GGGGAGGCTC TACCGTATGA CCACCATGGG GTGGCTAAAC ACGGGCGAGG TTCTGGGCTA CGCGCTTAAG GCGGGCGCGG CGCTGAGGGA TATGGAGTTC GTCCAGTGGC ACCCAACGGC GCTGGTCCCA AGCGGCATAC TGATCAGCGA GGCCGCCAGG GCCGAGGGGG GCTACCTCGT CAATAGACAC GGCGAGAGGT TCATGAAGAG GTACGCCCCC GAGAAGATGG AGCTGGCGCC GAGGGACGTG GTGTCTAGGG CGATAATCAC CGAGTGTATG GAGGGCAGGG GGTTCCTCCA CGACTCGGGC CTCTGCTACG TGGGCCTCGA CGTTAGGCAC ATAGACAGGA AGAGGCTGGA GGAGAGGCTA CCCCTCCTCC TGGAGCTCTC CAAGACCTAC GCCGGGGTTG ACCCAACCAC GGAGCTGATC CCCGTGAGGC CGGCCGTCCA CTACTTCATG GGGGGCATAT ATACGGACGT CCGGGGGAGG GTGCTGAACC ACAGGGGTGA GTGGATCCGG GGGCTCTGGG CGGCTGGGGA AGCCGCCTCC ACCGGCGTAC ACGGGGCCAA CAGGCTGGGC TCCAACTCCC TGTCTGAGTG CGCCGTCTGG GGGAGGATCG CGGGGGAGGA GGCCGCGGCC TACGCGGCTG AGAGACCCGC CCCGGGGGCC ACCGCCGTGA GGCTGGAGAT GCAGAAGGAG GAGGAGCACA TCGCGAGGCT GTCTAAGAAC GAGCGCGGCG GCGAGAGCCC CCCCAGCCTG AGGAAGAAGC TTCAGGACAT CATGGAGAGG GGGGCCGGCA TAGTTAGACA CGGCAGCGCG GCGTCTGAGG CCATGCAGAA GCTCAACCGG CTCTTCAACG CGCTGGAGGA GATGAGGATT ACGGACGGGG GGAGGGTTTA CAACATGGAG CTGAGGGAGG CGCTTGAGCT GGAGGGGATG CTCTACGCAG CCCAGGCCGT TTTGACGGGC GCCCTGCTGA GGCAGGAGTC AAGGGGGGCG CACTACCGGC TGGATTTCCC GAGGCGGGAC GACGGGTGGC TTGTCCACAC GGTGTACTAC CTCTACGGCG GCGCTATGCA CGTCTCAACG GCGAAGGTGG AGGTCACCAG GTGGATGCCC GAGGCTAGGA GGTACTGA
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Protein sequence | MDLLTYDVVV VGSGLAGLRA AVAAAARGAS VAVVTKTSGP RSHSISAEGG MAAVVHPEKT GDSPELHAYD TVKGGDFLVD QEAAMVLARE APAEVKFLDS IGVPWSRDPD GSYSLRMFGG MSKPRTVFAK DKTGFYIMSA LYRHARSFHN IHFYEEHIVT RLVVKNDVFY GLVALDMRRG ELVGFVAKAG VIAAGGAGRL YRMTTMGWLN TGEVLGYALK AGAALRDMEF VQWHPTALVP SGILISEAAR AEGGYLVNRH GERFMKRYAP EKMELAPRDV VSRAIITECM EGRGFLHDSG LCYVGLDVRH IDRKRLEERL PLLLELSKTY AGVDPTTELI PVRPAVHYFM GGIYTDVRGR VLNHRGEWIR GLWAAGEAAS TGVHGANRLG SNSLSECAVW GRIAGEEAAA YAAERPAPGA TAVRLEMQKE EEHIARLSKN ERGGESPPSL RKKLQDIMER GAGIVRHGSA ASEAMQKLNR LFNALEEMRI TDGGRVYNME LREALELEGM LYAAQAVLTG ALLRQESRGA HYRLDFPRRD DGWLVHTVYY LYGGAMHVST AKVEVTRWMP EARRY
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