| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tneu_0404 |
|---|
| Symbol | |
|---|
| ID | 6166171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermoproteus neutrophilus V24Sta |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_010525 |
|---|
| Strand | + |
|---|
| Start bp | 365049 |
|---|
| End bp | 366365 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641667562 |
|---|
| Product | nickel-dependent hydrogenase small subunit |
|---|
| Protein accession | YP_001793798 |
|---|
| Protein GI | 171184879 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.266321 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAA CAAGACGCGA TGTACTTAGG GCGGGTTCCC TAGCGGCGGC CCTCTCCGCT
TTAAACTGGC CAGCGCTTGT AAAAGCGGCG GGGGAGGCTG TGAAGGACGG CCTTGTAAAC
ATCGTTTGGT TCGAGGCGCA GGACTGCGCC GGCAACACAA CCGCGGTTAT CCAGGCCACA
GACCCGTCCC TCCTAGACGT CTTGCTCGGC ACGACGCCTC TCGTGGGCCC CGGCACAGTG
CGGCTGATAT TCCACGAGAC CGTGATGCCC CAGTGGGGCA CCTACCACGT GAAGGAGGCC
ACAGACGTGG CCGACCACAA GATCCTAGAG AACTACCTCC AGACCCAGCC GCCGCCCGGC
GATGCGATGA AAATACTTGA GGAGATAGCG GAGGGCAAAT ACGGGCCGTA CGTGTTGGTT
CTGGAGGGGA GCTTCCCGCA GGAGTACGGA ATATCCGGCA CAAACATCGA GCAGAAGGGC
GGCTACTACT GCCTAGTGGG CCACAGGACG TGTACAGATT GGGCGAAGCT CCTCTTCAAG
AACGCACTCG CCGTAGTGGC AGTAGGCAAC TGCGCCGCCT ACGGCGGCCT CGTGGCGAAC
AAGGTGCTGG AGCCCCCGCC CGGCTTCAAG TTCCCCACGT GGTCCCCATC GCCGACCGGC
GCCGTCGGCA TGTTCGACGA CCCGGTGAGG GGTATAAAGG GCATGATACA CATCGACTAC
TTCCAGCCTG AGGTGGAGCC GTTTAGGAAG TACATAGACG AAGGCGGCGT GCCCGACTTC
AAGACTATGA AGCCCGCCGT GGCGGTGCCC GGCTGCCCCG CAAACGGCAA CGGCATACTG
AGGACCCTCG CGCTTCTGAC GCTTGTCGCC GCCGGGTTGC TTAAGCCGGA CGTCCTGGAG
AGAAAGGCCT TCCTAGACCA GTACGCCAGG CCGCGCTTCA TATTTGAAAA CACAGTTCAT
GAGCAGTGTC CACGCGCCGC ATCCTACGCA GCTGGCGACC TAAGGCCCTA CCCGGGCGCC
GGCGACTACA AGTGCCTATT CGGCGTCGGA TGCAAGGGGC CGATATCCAA CTGCCCGTGG
AACAAGGTGG GTTGGGTCAG CGGCATAGGC GGACCTACGA GGACGGGAGG CGTCTGCATT
GGCTGCACCA TGCCGGGCTT CACCGACGCC TTCGAGCCCT TCTACGCGCC GCTCAACGCG
CCTAGGTTGC CGACGACGGA GACGCTGGGG GTTGCGCTGG GCGGCGCCGC TCTACTTGGC
GTCGCCGGAG CATACCTAGC CTCAAAGGCG GCTAAGCCCA AGGAGGAGAA GAAATGA
|
|---|
| Protein sequence | MKITRRDVLR AGSLAAALSA LNWPALVKAA GEAVKDGLVN IVWFEAQDCA GNTTAVIQAT
DPSLLDVLLG TTPLVGPGTV RLIFHETVMP QWGTYHVKEA TDVADHKILE NYLQTQPPPG
DAMKILEEIA EGKYGPYVLV LEGSFPQEYG ISGTNIEQKG GYYCLVGHRT CTDWAKLLFK
NALAVVAVGN CAAYGGLVAN KVLEPPPGFK FPTWSPSPTG AVGMFDDPVR GIKGMIHIDY
FQPEVEPFRK YIDEGGVPDF KTMKPAVAVP GCPANGNGIL RTLALLTLVA AGLLKPDVLE
RKAFLDQYAR PRFIFENTVH EQCPRAASYA AGDLRPYPGA GDYKCLFGVG CKGPISNCPW
NKVGWVSGIG GPTRTGGVCI GCTMPGFTDA FEPFYAPLNA PRLPTTETLG VALGGAALLG
VAGAYLASKA AKPKEEKK
|
|---|
| |