| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3900 |
|---|
| Symbol | |
|---|
| ID | 7873548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 4296508 |
|---|
| End bp | 4298214 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643700839 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002890862 |
|---|
| Protein GI | 237654548 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAACA CCCTGCAGAA AGTCTGGCAA CTCTTCACCG CTGCCGAGCA GCGCAAGGCG
CTGGGGATGC TGATGCTGGC CCTGCTCATG GCGCTGGCCG AAACGCTGGG CGTGCTCTCG
ATCATGCCTT TTCTTTCCGT GCTGGCCCGG CCGGGCGTGA TCCAGGAGAC ACCCTGGCTG
CACGAGCTCT ACACCCAGCT GGACCTTGCC CAGCCGCGAA GCTTCATCAT GGCCCTGGGC
TTGGCCTCCA TCGTGCTGGT CATCGCATCG TCCGCTTTCA AGACCATCAC CCAGCACCTG
CTCAACCGCT TCGTGCACCT GCTTCGCCAC TCCATCAGCA GCCGGCTGAT GACCCGCTAC
CTGGCCCAGC CCTACGAATT CTTCATCAGC CGCAACAGCG CGGAACTGTC CAAGACCATC
CTGGCGGAGG TCGACCTGGT CATGGCCAAC CTCATCCAGC CGCTCTCACA GGTCATCGTG
CAGGGCATCG TGGTGCTCGC CATGCTGGCG CTGGTGTTCG CCTACAATCC ATTCACCGCG
CTCGCCATCG TGCTGGTGGT CGGCACGCTG TACGGGCTGA TCTATCTGCT GGTGCGCCGT
CACCTCAGGC ATATCGGCAC CGAAATGGTG GAGGCCAACC GCCAGCGCTA TCAGACCTGC
AACGAAGCCC TGCAAGGCAT CCGCGACATC AAGATCACCC GCGCAGAAGC CGCATACCTG
CAGCAATACC AGCACGCCTC GCGCACCCAG GCGCGCCACA TGGCCGCCAG CGAGACGCTC
AGCCAGACTC CGCTCTACCT GGTGGAAGCG ACCGGCTACA CCGGCCTGAT CCTCATCGCG
CTGGCGCTGC TGCTCAAGAG CGACGATGTG GCCCACGTAC TGCCCGCGCT CGGCCTCTAC
GGCTTCGCTG CCTACCGCAT GCTGCCCGCC GCGCAGATCA TGTATCGCGG CTTTGCCCGC
CTGAATTTTG CCAGCGCCAC CCTCGACAGC CTGCACCGCG ACATGTCGCT GCCATTGCCC
GCCGCTGCGC CCGCTACCCA GCCGGCGATC GTGCCCAGGC GGGAAATCCG CCTGCAGGGC
ATCCGCTACG CCTACCCCTC GACACCCGAC AGACCCGTGC TGGACGCCTT CGACCTCACC
ATCCCGGTCA ACACCAGCAT CGGCATCAAG GGTCCCAGCG GTGCCGGCAA GAGCACCGTC
ATGGACATCC TGCTCGGCCT GCTCGGTCCG CAGGCGGGCA CACTGAGCGT GGATGGCAAA
ACCATCACCG CGCACAGCTT GCCGGCCTGG CAGGCCGCCA TTGGTTACGT GCCGCAGCAC
ATCTACATCG CTGACGCGAG CGTCGCCGCC AACATCGCCT TTGGCATCCC CCGGGACAAG
ATCGACATGC GGGCGGTCGA GCGCGCTGCC CGCGCCGCGC AGATCCATGA CTTCGTCACC
CGGGAACTGC CCCAAGGCTA CGACACCCCC GTGGGCGACC GTGGCATCCG CCTGTCGGGC
GGGCAGCGCC AACGCATCGG CATCGCCCGC GCCTTGTACC GCGACCCTCC CGTGCTGCTG
ATGGACGAGG CGACCAGCGC GCTGGATGGC GCGACCGAGG CGGCGGTGAA CGAGGCTATC
CGTAGATTGT CAGGCAGAAA AACCATTGTG GTGATAGCCC ATCGAGCGGC CTCTCTCTTA
GCTTGCGACG AATTATTCAA CATATAG
|
|---|
| Protein sequence | MRNTLQKVWQ LFTAAEQRKA LGMLMLALLM ALAETLGVLS IMPFLSVLAR PGVIQETPWL
HELYTQLDLA QPRSFIMALG LASIVLVIAS SAFKTITQHL LNRFVHLLRH SISSRLMTRY
LAQPYEFFIS RNSAELSKTI LAEVDLVMAN LIQPLSQVIV QGIVVLAMLA LVFAYNPFTA
LAIVLVVGTL YGLIYLLVRR HLRHIGTEMV EANRQRYQTC NEALQGIRDI KITRAEAAYL
QQYQHASRTQ ARHMAASETL SQTPLYLVEA TGYTGLILIA LALLLKSDDV AHVLPALGLY
GFAAYRMLPA AQIMYRGFAR LNFASATLDS LHRDMSLPLP AAAPATQPAI VPRREIRLQG
IRYAYPSTPD RPVLDAFDLT IPVNTSIGIK GPSGAGKSTV MDILLGLLGP QAGTLSVDGK
TITAHSLPAW QAAIGYVPQH IYIADASVAA NIAFGIPRDK IDMRAVERAA RAAQIHDFVT
RELPQGYDTP VGDRGIRLSG GQRQRIGIAR ALYRDPPVLL MDEATSALDG ATEAAVNEAI
RRLSGRKTIV VIAHRAASLL ACDELFNI
|
|---|
| |