| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_3008 |
|---|
| Symbol | |
|---|
| ID | 7874397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | - |
|---|
| Start bp | 3259232 |
|---|
| End bp | 3260158 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 643699929 |
|---|
| Product | Histone deacetylase |
|---|
| Protein accession | YP_002889983 |
|---|
| Protein GI | 237653669 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0354167 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGA CAGCATTCAT TACTCACCGT GACTGCTGGT TGCACGACAT GGGCGCGATG
CATCCCGAGT GCCCCGACCG GTTGTCGGCG ATCAACGATC GCCTGATCGC GTCGGGGCTG
GATATGTACG TGTCCTTTTT CGATGCGCCG CTCGCCGAGC GCGAGCACAT CCTGCGCGTG
CATCCGGCCG AGTATTTCGA CAACCTGATC GAGAGCGTGC CGGAGCACGG CATTCGCCAC
CTCGACCCCG ACACCGCGAT GAGCCCGGGC ACGATGAAGG CGGCGCTGCG TTCGGCGGGT
GCGGGGGTGT ACGCCACCGA CCTGGTGATG AAGGGCGAGA TCGAGAACGC GTTCTGCGCG
GTGCGTCCGC CCGGCCACCA TGCCGAACGC GCCAAGGCGA TGGGGTTCTG CTTCATGAAC
AATGTTGCCA TCGCTGCCCG TCATGCGCTC GAGGCACACG GGCTGGAGCG CGTCGCGGTG
GTCGACTTCG ACGTGCACCA CGGCAACGGC ACCGAGGACA TCTTCCGCAA CGACCCGCGG
GTGATGATGG CGGGGATCTT CCAGCATCCC TTCTACCCGT ATTGCGGCAC CGAGAATCCC
CCCGCGCACA TGTGCAACGT GCCGCTGCCG GCGGGTACGC GGGGCGATGC CTTCCGACAG
GTCTTCGGCG ACATCGTCGT GCCCGCGCTG CGCAGCCACA GCCCGCAGAT GATCTTCATT
TCCGCCGGGT TCGACGCGCA CTACGAGGAC GACATGGGTT CGCTCGGCCT GCTCGAGGCC
GACTACATCT GGGCCACTCA GCAGATCAAG GGCGTCGCCG AGTCCTGTGG CCACAAGCGC
ATCGTTTCCG TGCTCGAAGG CGGCTATTCG CTGTCCTCGC TGGCGCGCTC GGTGGTGGCC
CACATCAAGA CCCTGGCCGA TCTCTGA
|
|---|
| Protein sequence | MTTTAFITHR DCWLHDMGAM HPECPDRLSA INDRLIASGL DMYVSFFDAP LAEREHILRV
HPAEYFDNLI ESVPEHGIRH LDPDTAMSPG TMKAALRSAG AGVYATDLVM KGEIENAFCA
VRPPGHHAER AKAMGFCFMN NVAIAARHAL EAHGLERVAV VDFDVHHGNG TEDIFRNDPR
VMMAGIFQHP FYPYCGTENP PAHMCNVPLP AGTRGDAFRQ VFGDIVVPAL RSHSPQMIFI
SAGFDAHYED DMGSLGLLEA DYIWATQQIK GVAESCGHKR IVSVLEGGYS LSSLARSVVA
HIKTLADL
|
|---|
| |