| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmz1t_1523 |
|---|
| Symbol | |
|---|
| ID | 7083605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thauera sp. MZ1T |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011662 |
|---|
| Strand | + |
|---|
| Start bp | 1702151 |
|---|
| End bp | 1703569 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643698540 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_002355177 |
|---|
| Protein GI | 217969943 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCT GCCCGGCACC CGGCAAGGCG GAGGACGCCG AACTGCTCGC CGAGATCGCG
CTCGGCGTGC GCAGCGTCGA GGCGATCTTC CTGCCCGGGC TCGCGCTGCG CTGGATCAGC
CCCTCGATCG AGGCGCTTAC CGGCTTCACG GCGGCGGATT GCGTCGCGGC GGCCGACCCC
TTCGAACTCC TGGTGTTCGA GGACGATCGC GTGTTCTGCC GGCGGATGGC GCAGCGGGTC
GCTGCGGAGG AATCCGCCCA GGCCTTCGAG CTGCGCCTGC GCGCACGGGA TGGGCGGGCG
GTTTGGGTGC AGACGCACTG GCGGCCGCGC GCCGACGGCG GCCTGCGCCT GTCGGCCGAG
CACATCCAGG CGCGCAAGGA GACCGAATTC ACCCTGCTTG AGACGGTGGC CGAGCTGCGC
CGCCAGGAGG CGCTGCGCGA GCTCTACCTC GTGCGCAGCA ACGACGAGCG CCAGCGCCTG
GCTGCGCTGC TGAACCTGAT CCGGCTCGGC ATCCTGTTCA TCGACCACGA CCGCCGCGTG
CTCTACCACA ACCGTGCGAT GCTGGCGATC TGGGGCTATC CCCCCGACAC CGTGCTCGTC
GGCTGCCGCG ACGCGGTGCT CAAGGAGCGT GCGCCGGTCG TGCTCGCCGA TCCGGCGGGC
TATCTCGCCC ACATCCATCG CACCGTGCGG GCCAAGCAGT CGATCAGCGA AGAGTACGAG
TTCCGGTTCG CCGACGGGCG CATCGCCACC GACCGTTCGG CGGTGGTCGC GGGCGGGGAA
GCCGGGCGGC GCATCGGCCG GCTGTGGATC TACGAGGACG TGACCGTGGC GCGGCGCACC
TCGATGCAGC TCGTCGAGCT CGCCGAACGC GACGAACTCA CCGGTCTCTA CAATCGCCGT
CGCTTCCATG AAGAACTCGG TCGCATGCTC GCGGACGCCG GGCGTCGCGG CAGCCGGCTC
GGCCTCCTCG CCTTCGATCT GGACGGTTTC AAGCCGATCA ACGACTCCTT CGGCCACCAG
GCCGGCGACG AGGTGCTCGT TCGCCTCGCG CGGGAACTCG GGCGCACCGT GCGCCGCAAC
GAGACCTTGT TCCGCATCGG CGGCGACGAG TTCGCCCTGC TCGTGCCCGA GGGCAGCACG
GAGGGCCTGT GCGAACTCGC CCACCGCCTG GTGGAGACGG TGGGCGCGAT GCGCTTCGTC
TTCGAGGGCC GCGCGGCGCG CGTCACCGCC AGCGTGGGCA TCGCGCGCTT TCCCGACAAC
GCGCGCGAGG GCGAGGCCCT GGTCGCCGCC GCCGACGAGG CGCTCTATCG CGCCAAGTCG
GAGGGGCGCA ATCGCGCCGC GGTGTCCGGG AGGCGGGCCG ACGAATCGGC TAGAATGCCG
TCCTCGAACC CCGATGAACC CGCAAGCAGA GAGGATTGA
|
|---|
| Protein sequence | MSACPAPGKA EDAELLAEIA LGVRSVEAIF LPGLALRWIS PSIEALTGFT AADCVAAADP
FELLVFEDDR VFCRRMAQRV AAEESAQAFE LRLRARDGRA VWVQTHWRPR ADGGLRLSAE
HIQARKETEF TLLETVAELR RQEALRELYL VRSNDERQRL AALLNLIRLG ILFIDHDRRV
LYHNRAMLAI WGYPPDTVLV GCRDAVLKER APVVLADPAG YLAHIHRTVR AKQSISEEYE
FRFADGRIAT DRSAVVAGGE AGRRIGRLWI YEDVTVARRT SMQLVELAER DELTGLYNRR
RFHEELGRML ADAGRRGSRL GLLAFDLDGF KPINDSFGHQ AGDEVLVRLA RELGRTVRRN
ETLFRIGGDE FALLVPEGST EGLCELAHRL VETVGAMRFV FEGRAARVTA SVGIARFPDN
AREGEALVAA ADEALYRAKS EGRNRAAVSG RRADESARMP SSNPDEPASR ED
|
|---|
| |