| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_1711 |
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| Symbol | |
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| ID | 5298466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 1695680 |
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| End bp | 1696744 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 640769983 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001306935 |
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| Protein GI | 150021581 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATATT TTGAAGAGTT TCTAAATAAA TATAAAGTTA TCGATTTACT TAAAACATTA
GATATTCCTG CATATATCGT TGATAGGAAT AGAATCATAA AATTTTGGAA CAAATCAGCG
GAAAAACTTA TAGGATATAG TCCTGAAGAA GTAATTGGAA AATCATGTGC TGATAATGTT
TTAAAACACA TTGATAGAAA TGAAATAGTT GTGTGTCACA CGGATTTGTG TCCACTTAGC
ATGTCTATGA AAAATGAAAA ATATTTTAGA GTTCCATTTG CTGTATATTC TTTAACTAAA
AAAGGAGACA GAATACCAGT AAGTGTATAT GCAATTCCAA TAAAAGATGA TTTTGGAAAA
GTTATTGGTG CAATTGAAAT GTTTGAGGAT GCAACAATTT CAGACGAAGA ACTCACCAGA
GCTTTTGAAA TTCAACAAGC ACTTCTGCCA AAAAAAGACG AAGTAGTTGA TTTTGTTTAT
TATCCATCAA ATGTTTTGGG AGGAGACTTA ATATACTACA AAAAGTCATG GATTATGTTA
ATAGACATTA GTGGTCATGG ACTTGCAGCA GCATTACTCT CCACTTCAAT CAAGCTTATG
ATAGATTCAA TTCTTGAAAA TAATGACATT ACACTTGATG AACTTCCAGT GATTTTAGAA
AAAGAAGCTA TTCGCATATG CGACCAGAAT TACTTTACAG CTATAATAGG AAAACTCGAA
AGTAATAAAA TAAAAGTAGT AAGTTGTGGG CATCCAAATC CAATAATTTT TGATGGCAAC
AACGCCAAAA TTATCGATGT GGCTCGTACA TTCCCAATAG GTATGGGATT TTTAGATTCC
AAAGTTAAAC CCACTGTGTT AGACCTTGTT AATAACAAAA TTTTGTTTTA TTCAGATGGA
ATAACTGAAT TAAAAATTTC TAAAAATGAG ATGCTTGCAT CAAATGGACT TGCAAGGCTA
TTTGAAAAAA CACAGGATTT AAGAAAAGTA TATGAACAAG CCATGAAAAA CAATGTTGAT
GTTTACCAAA AAGATGATAT AAGCATGATA TTAATAAAAC AATAG
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| Protein sequence | MEYFEEFLNK YKVIDLLKTL DIPAYIVDRN RIIKFWNKSA EKLIGYSPEE VIGKSCADNV
LKHIDRNEIV VCHTDLCPLS MSMKNEKYFR VPFAVYSLTK KGDRIPVSVY AIPIKDDFGK
VIGAIEMFED ATISDEELTR AFEIQQALLP KKDEVVDFVY YPSNVLGGDL IYYKKSWIML
IDISGHGLAA ALLSTSIKLM IDSILENNDI TLDELPVILE KEAIRICDQN YFTAIIGKLE
SNKIKVVSCG HPNPIIFDGN NAKIIDVART FPIGMGFLDS KVKPTVLDLV NNKILFYSDG
ITELKISKNE MLASNGLARL FEKTQDLRKV YEQAMKNNVD VYQKDDISMI LIKQ
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