Gene Tmel_1650 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1650 
Symbol 
ID5297591 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp1640173 
End bp1640433 
Gene Length261 bp 
Protein Length86 aa 
Translation table11 
GC content26% 
IMG OID640769927 
ProductCRISPR-associated Cas2 family protein 
Protein accessionYP_001306879 
Protein GI150021525 
COG category[L] Replication, recombination and repair 
COG ID[COG1343] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR01573] CRISPR-associated endoribonuclease Cas2 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.405387 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACGTAA TAATGGTATA TGATGTTAAT AAAAAAAGAG TACAAAAAGT TTTAAAAACG 
GCAAGGAAAT ACTTAAAATG GGTGCAGAAA TCTGTATTTG AGGGCAAAAT AACGGAAAAG
AATTTAAAAA AATTAAGAGA TCAATTATTG GAATTAATTA ATCAAGAGGA AGATTCTATA
TATTGGTATA TAATGGAGCC TGAGTTTAAA CCCTATAGAA AAATATTGGG AAAATCGGAG
AATATTTCAA ATCTAATTTA G
 
Protein sequence
MYVIMVYDVN KKRVQKVLKT ARKYLKWVQK SVFEGKITEK NLKKLRDQLL ELINQEEDSI 
YWYIMEPEFK PYRKILGKSE NISNLI