Gene Tmel_1525 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_1525 
Symbol 
ID5296754 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand- 
Start bp1513592 
End bp1514236 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content32% 
IMG OID640769802 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_001306755 
Protein GI150021401 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTAAAAT TAAGTGGATC TATCCTAGCG GCAAATCTTT TAAACTTAAA AGAAGAATTA 
AAAAGAGTAG AAAACCTTAT TGATGAAATA CACATTGATG TAATGGATGG CCATTTTGTT 
CCAAATTTAA CCTTTGGTTT TCCTTTAATT AGTGCAGTAA AAGAAGTGAC AAATTTGCCA 
ATAGACGTCC ACCTTATGGT TACAAATCCA GAATTTCACA TTGAAAAATT ACTAGACTAT 
GACATACAAA GAATAACCGT ACATATTGAA AGTACACATC ACATCCACAG AGCCATTACT 
AAAATAAAAG AAAACAATAT AGAAGCATTT GTAACCTTAA ACCCAGGAAC CCCACTTGTT 
TTTATTGAAG AGGTAATCCC ATATATAGAT GGGGTATTGG TTATGAGTGT AAATCCAGGG 
TTTTCTGGGC AAAAATTTAT TGCAAAATCC ATAGAAAAAA TCAAAACTCT AAATAATTGG 
AAACAAAAAC ATGGAATGAA CTATTCAATT GCAGTAGATG GCGGAGTAAA CGATTCAAAC 
GCAGATGTAA TAATTTCAGC TGGAGCAAAT ATTCTAATAA TGGGGTATGG TATATTTAAA 
AACCCAGAGC TTGAGAATTT CTCAAAACAA CTTAGAAAAA AATGA
 
Protein sequence
MVKLSGSILA ANLLNLKEEL KRVENLIDEI HIDVMDGHFV PNLTFGFPLI SAVKEVTNLP 
IDVHLMVTNP EFHIEKLLDY DIQRITVHIE STHHIHRAIT KIKENNIEAF VTLNPGTPLV 
FIEEVIPYID GVLVMSVNPG FSGQKFIAKS IEKIKTLNNW KQKHGMNYSI AVDGGVNDSN 
ADVIISAGAN ILIMGYGIFK NPELENFSKQ LRKK