Gene Tmel_1394 details

Gene Information

• Locus tag: Tmel_1394
• Symbol: upp
• ID: 5298370
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: -
• Start bp: 1397332
• End bp: 1397958
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 33%
• IMG OID: 640769669
• Product: uracil phosphoribosyltransferase
• Protein accession: YP_001306626
• Protein GI: 150021272
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0035] Uracil phosphoribosyltransferase
• TIGRFAM ID: [TIGR01091] uracil phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.588374
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATTA ACGTGGTAGA CCATCCCCTA ATTAAACATA AATTAACACT TATGAGAAAA 
AAAGATACGG GTCCAAAGGA ATTCAGAGAG CTTTTAAAAG AAATAACACT TTTAATAGCC 
TATGAAGCAA CTAGACATAT TGAAACATTT GAAACAGAAA TTGAAACCCC GCTTGAAAAA 
ACTAAAGGTC ACTTTATTAA CGATAAAGAT GTTGTAATTA TTCCTATTCT AAGGGCAGGC 
CTTGGCATGT CTGATGGAAT ACTTCAACTA CTTCCAAATG CTTCTGTTGG ACATATAGGA 
ATATACAGAG ATCCAAAAAC TTTAGAGGCA GTTGAATACT ATGCAAAGTT TCCTAAAATC 
ACAGATAACT CAATTGTATT TGTACTTGAT CCAATGTTAG CAACAGGTGT ATCATCGATA 
AAAGCTCTAG AAATAGTTAA GAAAAATGGG GCCAAAAACA TTATTTTAGT AACGTTAATA 
GCATCACCTG AGGGAACGGA AAAAGTTAAT ATAGAACATC CCGATGTTAT TATATATACC 
GCTTCATTAG ACAAAAAATT AAATTCTAAA GGCTATATTC TTCCTGGACT TGGAGATGCG 
GGAGATAGAC TTTTTAGAAC AAAATAG 

 

Protein sequence

MKINVVDHPL IKHKLTLMRK KDTGPKEFRE LLKEITLLIA YEATRHIETF ETEIETPLEK 
TKGHFINDKD VVIIPILRAG LGMSDGILQL LPNASVGHIG IYRDPKTLEA VEYYAKFPKI 
TDNSIVFVLD PMLATGVSSI KALEIVKKNG AKNIILVTLI ASPEGTEKVN IEHPDVIIYT 
ASLDKKLNSK GYILPGLGDA GDRLFRTK