Gene Tmel_1070 details

Gene Information

• Locus tag: Tmel_1070
• ID: 5296763
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 1096657
• End bp: 1097229
• Gene Length: 573 bp
• Protein Length: 190 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 640769353
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_001306315
• Protein GI: 150020961
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.921927
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAT TCGAAAAAAT AGCAACACCA ATTGAGGGGT TATATATAAT AAAGCCAACC 
GTATATGGAG ATAGTAGGGG ATTTTTCATG GAGAGCTGGA ATAGGAAAGA ATTTGCTGAG 
ATAGGACTTG ATATGGATTT TGTACAGGAT AATCATTCAA AGTCGAAAAA AGGAGTATTA 
AGAGGGCTTC ATTTTCAAGA AAAATATCCA CAGGGAAAGT TGGTACGTGT TGTAAAAGGT 
GTAGTTTACG ATGTAGCAGT AGATTTACGA AAAGATTCAC CAACGTTTGG AAAATATTAC 
GGAGTTATAT TATCAGAAGA AAATAAACTG ATGTTTTATA TTCCAGAAGG ATTTGCGCAT 
GGATTTTTAG TATTAAGCGA TGAGGTGCAC TTTTTATATA AAGCAACAGA ATATTATTAT 
CCTGAATATG ATTCAGGAAT AATATGGAAC GATCCTGATA TTGCTATAAA ATGGCCGTTT 
GAGGAATATA GAATAGAATA TCCAATATTA TCAGAGAAAG ATAAAAAACT TCCAACATTA 
AGAGAATATC TTGAAAGAAG GAAGAAACTG TGA 

 

Protein sequence

MPKFEKIATP IEGLYIIKPT VYGDSRGFFM ESWNRKEFAE IGLDMDFVQD NHSKSKKGVL 
RGLHFQEKYP QGKLVRVVKG VVYDVAVDLR KDSPTFGKYY GVILSEENKL MFYIPEGFAH 
GFLVLSDEVH FLYKATEYYY PEYDSGIIWN DPDIAIKWPF EEYRIEYPIL SEKDKKLPTL 
REYLERRKKL