Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_1024 |
Symbol | |
ID | 5296777 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 1051259 |
End bp | 1053349 |
Gene Length | 2091 bp |
Protein Length | 696 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 640769308 |
Product | DNA topoisomerase I |
Protein accession | YP_001306270 |
Protein GI | 150020916 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.352033 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAAAAGA AAAAGAAAGT AATAATTGTT GAATCTCCGG CAAAGGCAAA AACTATAGAA AAGATATTGG GGAAAAATTT TAAAGTTATA TCATCCAAAG GACACGTTAG GGATCTTCCA CCAAAAAAAT TTGGAGTGGA CCTTAAAACT TTTGAGCCCG AATTTGAGAT AATTCCCGGG AAAGAAAAGG TAATTGAAAA AATAAAGAAA GAAACAGAGG GAAAAGAAGT ACTTATAGCT TCAGATATGG ATAGAGAAGG AGAAGCTATT GCCTGGCATT TGTCAAATAT CTTAAATCTA TCTGGAAAAA ACCGTATAAT TTTCACTGAA ATCACTCCAA ATACCATTAA AAAATCCGTA GAAAATCCAA GAGAGATTGA TATAAAAAAG GTAAATGCTC AGCTTGCAAG AAGGATACTC GACAGAATAG TTGGATACAA AATAAGTCCC CTTCTTTGGA AAATAATTAA AGGTGCAATG AGTGCAGGAA GGGTTCAATC AGCGGCACTA AAAATCATAT GTGATAGAGA AAGAAAAAGA TTCTTATTTA AACCAAAGGA ATTCTACAAA GTTTCTATAG AAATAAAAAA GGTGAAAGCA AACCTTTGGG GAATTTCTGG AAAAAAGATA AAACAAGAAA ACATAACTGA AGAAATAGCA AATGACATTA AAGAAACGGT AAAAGAAGTA ATACTTGAAA AAATTTCAGA AAAAGAAAGA AAAAAATCTT CACCTTTACC ATACATAACC AGTACATTAC AACAAGACGC TGCAACAAAA CTGGGGTTTC CCGTTTCAAA AACAATGCAA ATTGCACAGG CGTTGTACGA AGGTGTGGAT ACAAAAGAAG GTCATATCGC CTTTATAACC TATATGAGGA CTGATTCAAC TCGCGTTTCA GAAGAAGCAA AAGAAATGGC AAAAGCATTT ATAGAAAAAA AATTTGGAGA AAATTATCTT GGTACAACCA AAAAAGGAAA GAAAAAAAAG AAAAACGTAC AAGATGCCCA TGAATGTATA CGACCTGTAA ATGTTGAAAT AACACCTGAG ATTGCACAAG ATCTGCTCAA TAAAGATATG TACAAATTAT ACAAAATCAT ATGGAAAAGG TTCGTTGCCT CACAAATGAA AGAGGCTACC TACAAAGACA AAACCTATAT ATTCAAAAGT GGAAAATACG AATTTAGAAC AACAATTTCG CATAGGATAT TTGATGGTTT TGAAATAATT TACCCTGAAA AAGAAACTAC AGAAAAAGCT GTACAGCTTA ATGAAGGAGA AAAATACAAA GTTTCAAAAA TAAATGTAGA GAAAGACGCT ACAAAACCAC CTTCAAGATT TACCGAAGCA ACACTTGTAA AAACACTAGA AGCAGAAGGA ATCGGAAGAC CAAGCACTTA TGCGACCATA ATTTCTACTT TACTCCAAAG AAAATATGTT GTAAAAGAAA AAAAAGAACT CGTTCCCACA CTCCTTGGTT TTGTGGTAGA AGACTTTTTA ACAAAAAAAT TTCCAGAAAT AGTAGACAAA AAATTTACAG CACTAATGGA AGAGGAATTG GACAAAATAG AAGAAGGAGA AAAAAAGTGG AAAGAAGTCT TAAATGAATT TTACTCTAAA TTTTCAAAAG ACTTATTAAA TGCACAAAAG GAATTCTATA CAATAAACTA TGAAACAGAT TTAAAATGCG AAGAATGTGA AAATACATAT AAATTAAAAA TAGGAAAATA TGGATTGTAC TTAAACTGCG AATCTTGTGG GAAAAACAAA AGCATCGATA ACACATTAAA TGCAGTTATA ATCAAAAACA ATGCATACAT ACAAAAAGCT ATTGAAAAAA ATATAAAAGA AACAGTTTCT GAAAATTCAT GTCCAAAATG TGGCGGACAT TTAACAAGAA AAAAAGGAAA ATTTGGATAT TACTTTAAAT GTGACAATTG TGATTTTACA GTTTCCGGAT ATAAAATTGC GGCGGGGAGA TGCCCCAAAT GTAGTTCTGT AGTTGTTATG AAAAGAAGTA AAAACAACAA AATATATTGG GCATGTTCAA ATCCAGATTG TGATTATATG TCATGGAATG AACCAAAATG A
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Protein sequence | MEKKKKVIIV ESPAKAKTIE KILGKNFKVI SSKGHVRDLP PKKFGVDLKT FEPEFEIIPG KEKVIEKIKK ETEGKEVLIA SDMDREGEAI AWHLSNILNL SGKNRIIFTE ITPNTIKKSV ENPREIDIKK VNAQLARRIL DRIVGYKISP LLWKIIKGAM SAGRVQSAAL KIICDRERKR FLFKPKEFYK VSIEIKKVKA NLWGISGKKI KQENITEEIA NDIKETVKEV ILEKISEKER KKSSPLPYIT STLQQDAATK LGFPVSKTMQ IAQALYEGVD TKEGHIAFIT YMRTDSTRVS EEAKEMAKAF IEKKFGENYL GTTKKGKKKK KNVQDAHECI RPVNVEITPE IAQDLLNKDM YKLYKIIWKR FVASQMKEAT YKDKTYIFKS GKYEFRTTIS HRIFDGFEII YPEKETTEKA VQLNEGEKYK VSKINVEKDA TKPPSRFTEA TLVKTLEAEG IGRPSTYATI ISTLLQRKYV VKEKKELVPT LLGFVVEDFL TKKFPEIVDK KFTALMEEEL DKIEEGEKKW KEVLNEFYSK FSKDLLNAQK EFYTINYETD LKCEECENTY KLKIGKYGLY LNCESCGKNK SIDNTLNAVI IKNNAYIQKA IEKNIKETVS ENSCPKCGGH LTRKKGKFGY YFKCDNCDFT VSGYKIAAGR CPKCSSVVVM KRSKNNKIYW ACSNPDCDYM SWNEPK
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