| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0916 |
|---|
| Symbol | |
|---|
| ID | 5296489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 951649 |
|---|
| End bp | 953832 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 30% |
|---|
| IMG OID | 640769195 |
|---|
| Product | surface antigen |
|---|
| Protein accession | YP_001306162 |
|---|
| Protein GI | 150020808 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.733535 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT ATTTTGTCTT GTTTTTTTTG GGGATATTTT TGTTATCATT TGGTGCAATT
TTAGAAAAAG TAACTATTAA TGGGTTAAAT CTTTTAAAAG AAAATGATTT GGAATTTGCA
TATGCAAGTT ATTTAGGAAA GGACATTAAC GATTATGCAA TAGCCGATAT TATTAGAAAT
TTAAAAGGAA CAGGTTATTT TTCAAGTGTT GAGTGGTCAA AGATTGAAAG TGAAAAGGGA
ATTGAGCTTG TAATAGATGT TTTGGAAAAC AAAAAGGTTG AAAAAGTAAA TCTAGAGATA
AATGGTGTAG AGTTGGTTTC CAAAGATACA CTTAATGCAT CAATAACATT GTTGGAAGGT
AAACCATTTA GCTTCATGAA ATTTAGAGAG AGTATACTTA ATATTTCTAA AATTTATGAA
GATGAAGGAT ATATAGTTTC CAATGTTTTT TCAAAAAACA AGGATCAGGG ATTTATTTAT
GTTACAGGTA CAATTGATGC TACAGAAGTG ACGTTTAAAG TTATTGAATA CGCACTCTAC
AGTGTTGAAT TTAGTGGTGA AGTAGAAGGA TTAGAAGAGA TATTGTCAAA AATTAAAAAA
GATGCAAATT TGAAAGAGTA TAAAGATTAT TTAGAAAAAA ATTGGTTTTT GAGGCTTTTC
GATAATGAAA AATCATATTA TCCAAAAATG GCAGATTTAC AAAGAATTTT TCAAGAATTT
GGAAAATATG TTTATTTTTC ACCATATTCC AATATCCAAA TATTAGATGT AAATGGTGAA
AAACCATCGA AAAAGTTAAG TATTGTAATT GTACAAAATA AACTTTTAAA AGATCAAAAG
GATCAAAAAT TTATTAAAGG TGTTGAAGTT TTGGGCAACA CTCTAAACGA TTTTTCTGAT
GTAACACTTT CTGGTACTGT AACAAATTTA GATTTATTAA ACACATTGCA AAAGGTAAAA
AGTTGGTATG ACGAGAAAAA TTACATAGTA AGTGTAAAAC CGGAAATAAG AGATGAAGAA
TTTTTAATAC ATGTAACAGA ATATAAATTT GGTGATGTGG AAATTGAAGG TTTGGAACAA
ACAAAACCTT ATACTTTTGA TGATTTAATA TCTATAAAAC CTGGAGGTTA TGCAAATAGG
GATGAACTTA GAAATACATA TGTGGAAATT TACAAAACAC AATTTTTTGA TGGAATAGAT
TTTGATATTA CCCCAGCTGC AACAGATGTT TTAGATGTAA AGTTAAAACT TGAAGAAAAG
GTAAAAAAGT TTAATTTTAT AGGTGGTGGG ACATGGGGGC CTCCTGGCGA AGGAAAACCT
TGGTATGAAG GACTTGCAGG ACAACTTCAA CTTAAGACAG TTAATCCTTT TGGATTGGGG
CAATCAATTG GTTTAAGTCT TTTTTTGGGG GTTTCAAATA AATCGGTAAG TTTTAATTAT
TCAATAAGAA AACCGTTTGC AATGCCGGTA ATTTTTGGTG GAAGTTTAAA TTATTCATAC
ATAACAGAGG CATCAACTTT GACGGATGAT GCTACTGTGA CTAATAACTT TGGATTTGAC
ATTACGTTGT CATCCTTAAA GATAAATAAC AATTCGTTTA CTTTTGGTTT TGGAATGGAT
TATAAGATGA TATATTTTAA TACAGAAGAA GAGTACTTGG GAGGAAATGT ATTAGCAGGT
TATACGTTCG AAACTCTTGA TGATTTGGTA ATACCAACTG AGGGTTGGTA TTTTGGATTA
ATTGGACAGA AGTATTTTAA AATTTTAGGC AATGCACCTG TTGCGGATAA ATTCCAAGAA
GAACTGTCTT TGCATATACC ATTTGGTGAT TTTACACTTG CGTCAAGATT TTTCGCATCA
CAACTTTTCC AATATGAAGG TACAAAGATA CACAATTATC TATCTGGATT GAATAGTTTG
AGAGGTGCTA CGTTAGAGGG AAATATGACA TTTTTGATGA ATAACGATAT AAGATATGTT
GATAAGAATA GTAATTATCC ATTCTATATT GCAGGTTTTG GAGATTTTGC TTTTGTTGGT
GATGAATACA CATTTGATAT GTTAAAATGG TCTGTAGGAG TTGAGTTAGG ACTTAATCTC
CCGTTCTTAG GTTTAATAAG GGTTGGAGAG GCGTATTATG AAAATAATTG GAATTTCTTC
TTTTTAATGG GAAAAACATT CTAA
|
|---|
| Protein sequence | MKKYFVLFFL GIFLLSFGAI LEKVTINGLN LLKENDLEFA YASYLGKDIN DYAIADIIRN
LKGTGYFSSV EWSKIESEKG IELVIDVLEN KKVEKVNLEI NGVELVSKDT LNASITLLEG
KPFSFMKFRE SILNISKIYE DEGYIVSNVF SKNKDQGFIY VTGTIDATEV TFKVIEYALY
SVEFSGEVEG LEEILSKIKK DANLKEYKDY LEKNWFLRLF DNEKSYYPKM ADLQRIFQEF
GKYVYFSPYS NIQILDVNGE KPSKKLSIVI VQNKLLKDQK DQKFIKGVEV LGNTLNDFSD
VTLSGTVTNL DLLNTLQKVK SWYDEKNYIV SVKPEIRDEE FLIHVTEYKF GDVEIEGLEQ
TKPYTFDDLI SIKPGGYANR DELRNTYVEI YKTQFFDGID FDITPAATDV LDVKLKLEEK
VKKFNFIGGG TWGPPGEGKP WYEGLAGQLQ LKTVNPFGLG QSIGLSLFLG VSNKSVSFNY
SIRKPFAMPV IFGGSLNYSY ITEASTLTDD ATVTNNFGFD ITLSSLKINN NSFTFGFGMD
YKMIYFNTEE EYLGGNVLAG YTFETLDDLV IPTEGWYFGL IGQKYFKILG NAPVADKFQE
ELSLHIPFGD FTLASRFFAS QLFQYEGTKI HNYLSGLNSL RGATLEGNMT FLMNNDIRYV
DKNSNYPFYI AGFGDFAFVG DEYTFDMLKW SVGVELGLNL PFLGLIRVGE AYYENNWNFF
FLMGKTF
|
|---|
| |