| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0870 |
|---|
| Symbol | |
|---|
| ID | 5298124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 905251 |
|---|
| End bp | 906267 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 29% |
|---|
| IMG OID | 640769148 |
|---|
| Product | aminotransferase, class V |
|---|
| Protein accession | YP_001306116 |
|---|
| Protein GI | 150020762 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0075] Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAATG AGATATTAAA AATTGGAGCA AAGCAGATTC CTTATTTTAG AACAGATGAA
TTTTCTCAAT TAATGTTTGA AATTGAGAAA CTTTTCGTGA AGATTTTGAA TGCCCCCATG
AATTCTAAAT TTATTTTACT TACTGCATCT GGCACAGGCG CCATGGAAGC TGCTGTAATG
AATCTTTTTA CAGAAAAAGA TAAAGTATTA GTTATTAATG GTGGAACTTT TGGTAAAAGA
TTTGCTGAGT TATGTAGATT ACATGGTATT GATTTTAGGA CTATTGATTT GAAATTTGGT
GAAAGATTAA CGGAAGAACA TTTAAAACCA CATGATAACA AAGGATATAC AGCTTTGTTA
GTTAATATTC ACGAGACTTC CACAGGACAA TTATATGATA AAAAGTTACT TTCGGAATTT
TGCAAAAAAA ACGATATGTT GTTTGTGGTA GATGCAATTA GTTCTTTTTT GGCAGACGAA
TATGATATAG AAAAATACAA TATAGATTGT ACGATATTAA GTTCTCAAAA GGCTTTAGCA
TTACCTCCTG GACTATCATT TTTAATTTTG AGTGAAAAAT CTGTTGAGAG GATAAAAAAT
AGAAAGCCAA AAAATATGTA TTTTAATTTA AGTGATTATC TTTCTAATAT GGAAAGAGGA
CAAACGCCTT TTACTCCAGC TGTAGGTATT GTGTATCAAC TGTATGAAAA ATTAAAAAAT
ATAAACAATG TTGGGGTAAG GCCTTTTATT GAGAAGACAA AGAAACTTGC ACATCATTTT
AGAGAAAATA TTGACAATCT AAACGTAGTT GTTCCTGATT ATTCTCTTTC AAATGCATTA
ACACCAATTT TAGTAGAAAA TGCATTTGAA GTTTTTTTGA AATTAAAAAA GAAAGGTATT
TTCGTTACAC CAAGTGGAGG TAGTTTAAAG AACAGACTTC TTAGAATAGG ACATATTGGT
AATTTGACTA CAGAAGACAA CGAAACTTTA ATTAGAAATT TGGAGGAGAT ATTATGA
|
|---|
| Protein sequence | MENEILKIGA KQIPYFRTDE FSQLMFEIEK LFVKILNAPM NSKFILLTAS GTGAMEAAVM
NLFTEKDKVL VINGGTFGKR FAELCRLHGI DFRTIDLKFG ERLTEEHLKP HDNKGYTALL
VNIHETSTGQ LYDKKLLSEF CKKNDMLFVV DAISSFLADE YDIEKYNIDC TILSSQKALA
LPPGLSFLIL SEKSVERIKN RKPKNMYFNL SDYLSNMERG QTPFTPAVGI VYQLYEKLKN
INNVGVRPFI EKTKKLAHHF RENIDNLNVV VPDYSLSNAL TPILVENAFE VFLKLKKKGI
FVTPSGGSLK NRLLRIGHIG NLTTEDNETL IRNLEEIL
|
|---|
| |