| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0643 |
|---|
| Symbol | rplA |
|---|
| ID | 5296661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | + |
|---|
| Start bp | 681266 |
|---|
| End bp | 681964 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 640768920 |
|---|
| Product | 50S ribosomal protein L1 |
|---|
| Protein accession | YP_001305892 |
|---|
| Protein GI | 150020538 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0081] Ribosomal protein L1 |
|---|
| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0857628 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAAGC ACTCCAAGAG GTATAACGAA GTTAGAAAAT TGGTTGATAG AACAAAAGAG
TACGATTTGA ATGAAGCAGT TGATCTTGCT AAGAAAGTTG CAACTGCAAA ATTTGATGAA
ACCGTAGAAT TACACATAAA AACAAACATC GATTACAGAA AATCTGACCA ACAAATAAGA
AGTACTATTT CTTTACCACA TGGTACAGGT AAAGAAGTTA GAGTTCTTGT TTTTGCAAAA
GGTGAAAAAG CCGAAGAAGC TAAAAAAGCT GGCGCAGATT ACGTAGGTGC GGAAGATTTA
GCGGAAAAAA TTCAAAAAGA AGGTTTTCTC GATTTTGACG TTGCAATCGC AACACCAGAT
ATGATGAAAA TAATAGGAAG ACTTGGTAAA ATTCTTGGGC CTAGAGGATT AATGCCAAAT
CCAAAAGCTG GAACAGTAAC AAATGACGTT GCAGCTGCTG TAAAAGACTT TAAAAAAGGT
AGAATGGAAA TTAGAACCGA TAAAACAGGC AATTTGCATA TTCCAGTAGG AAAGGCATCC
TTTGAAAAAG AAAAACTTAC AGAAAATATT AAATCTGCCT ATGAGCAAGT ATTGAACTTA
AAGCCTACGG GTGTTAAGGG AACATTCATA AAAAAGGTCG TTCTTTCAAC AACAATGGGA
CCTGGAATAA AAGTAAATCC TGCAACACTT ACTCAATAA
|
|---|
| Protein sequence | MPKHSKRYNE VRKLVDRTKE YDLNEAVDLA KKVATAKFDE TVELHIKTNI DYRKSDQQIR
STISLPHGTG KEVRVLVFAK GEKAEEAKKA GADYVGAEDL AEKIQKEGFL DFDVAIATPD
MMKIIGRLGK ILGPRGLMPN PKAGTVTNDV AAAVKDFKKG RMEIRTDKTG NLHIPVGKAS
FEKEKLTENI KSAYEQVLNL KPTGVKGTFI KKVVLSTTMG PGIKVNPATL TQ
|
|---|
| |