Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_0501 |
Symbol | |
ID | 5298198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 528996 |
End bp | 533945 |
Gene Length | 4950 bp |
Protein Length | 1649 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 640768762 |
Product | DNA-directed RNA polymerase, beta' subunit |
Protein accession | YP_001305753 |
Protein GI | 150020399 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGGGTT CAACTTTTAA GAGAAAAATT TCTAAAGTTA CGGTTAAAGT TGCCTCGCCA GAAGTAATAA GAAGCTGGTC AAGTGGTGAG GTCAAAAAAC CCGAAACCAT AAACTATAGA ACCTTTAAAC CAGAAAAGGA TGGGCTATTT TGTGAAAAGA TATTTGGTCC TACGAAAGAC TACGAATGTG CTTGTGGAAA GTATAAAGGA AAGAAGTATG AAGGTACAGT ATGTGAAAGA TGTGGAGTTA GAGTAGAATC AAAAGAAGCA AGAAGAAAAC GAATGGGGCA TATTGACTTA TTTGCTCCTG TGGTCCATGT TTGGTATTTA AAAAGTAGTC CAAGTATACT TTCATCACTT CTTGGTATTC AGGCAAAAGA GTTGGAGAAT GTAATATATT ACGGTGGTAA AAGAATAATA GAGAAGATAT TGATAGTAAC TAATCCCAAA GATACAGATT TCATAAAGGG TTCGTTACTT TATCAAACAG AATATGAAAT ATACAATCAA AAATTGGATT TTGAAGTTAT GCCTGGAGTT ATTATTAAAT CACCTGTAGC TCCTGTAATA AGTAGTATAT CTGGTGAAGT AAAAATAAGA CACGAAAAGA CACATACTGA CAGAGAAATT ACTTGGGTAG ATGTTAGAAA GATCTCAAGA GCAGAGCATA GGGTATACAA TGGAATGGTT TTGAATGTAA AAAATGGGGA TTATGTGAAC CAAGGTGATG AGATTGTTTC GGAAATGCAA ATTGACCCAA TTTATGCTCC TTTTGATGGA ACAGTTGAGA TAGATGAAAT ATCGAATACC ATTACAATAA AGCCTTTAAC AACAAGTAAA GATATGCCAG TTACCTTCTC GTTGCCATAT GGTGTTAAAC CTGTAGTTCC TAATAATAGC AAGGTAAAAA AAGGTGATCA ATTAACAAAT GGAACAGTTT TACCAGCTGT AATAGCATCT GTTAGTGGGA ATATAAGCTT TGGAAAGGAA CTTAATGTAA GACCTCTAGA AGATGGAAAG TACGAGGTAT TAACAAGTGG AAGTGTGTAT GTAGAAAATG TTGTGGAGGA AAAGCATTAT CCATTATTTG AAGGGGCATT TGTTTACGTA AAAGATGGTG ATGAAATTTC AGAAGGTCAA ACAATAGCAG ATAGATTTTT ATTTGAAGAT GAGTATTTAA CACTTGATGA GTACAAAATT TTCGAGCAAC ATTATCCTGC AATGTTTACA GCAGAATCGG AAGTTGAAAA TGATAGACCC ATAGTGGTAA TCACAGAAAT TGATGATGAA GTTTCTGTTG AGACAGGGCT AAAGATAGGT GATATAATAA CTGATCACCA ATATAGTGCG TATAGAACGC TGTATAATGA TAAAATTGAG GCGGATTCTG GAGCCTCTGC TATAAAGAAG CTTTTACAAA AATTAGATCT TGAAAAGTTG AAAGCAGAAA TCGAATCAGA ATTAAAAAAG GTCTCTAAAA GCAGTGGAAG GGCAAAAAAA CTTCTTAGAA GATTAAAAAT TGTAAAAGAT TTGTTAAAGA GCGAAACGAA ACCTGAATGG ATGATACTTG AAGCTATTCC AGTTGTTCCA CCTGACATTA GACCGATGAT ACAGGTCGAA GGTGGAAGGT TTGCCACTAC AGATTTGAAT GATTTGTACA GAAGGGTTAT AAACAGAAAC AACAGATTGA AAAAACTTTA TGAAATGAAT TCTCCGGAGA TAATTATAAA AAACGAAAAA AGGATGCTAC AAGAAGCAGT AGATAGTCTA ATATACAATG GAAGAATGGG AAAAGCTGTA ACGGATAGAA ATGGAAGGGC ATTAAAATCA CTAACAGACC TGCTTAAAGG TAAAAAAGGA AGGTTTAGAA GAAATCTACT TGGTAAGCGT GTGGACTATT CTGGACGTGC TGTAATAGTC GTTGGGCCTC ATCTAAAGAT TCATGAATGT GGGCTTCCAA AGAAAATGGC TATGGAATTA TTCAAGCCAT TTGTATTGGC GGAACTCTTA AATAAAGATG ATGAAACAAG TAAAACTGCT AGGAAGATGA AAAAGGCAAT TATTGAAAAG GAAATGCCTC AAGCATATGA AGTACTTGAA GAAATAATAA AGGGTCACCC GGTCCTTCTA AATAGGGCAC CTACATTGCA TAGGATGTCA CTTCAGGCAT TTGAACCAAA GTTAATTGAA GGTAATGCAA TACAACTTCA TCCACTTGTG TGTCCACCAT TTAACGCAGA CTTTGATGGG GACCAAATGG CTGTTCATGT GCCATTGTCT GCTGCAGCAC AGGCTGAGGC AAAATTCTTG ATGCTTTCAA GATACAACAT AATTTCACCT GCACATGGAA AACCAATATC TATGCCTGGT AAAGATATTG TTGCAGGTGT CTATTATCTT ACAATGGTTG GAAAAGATTA TGATAAGGTT CAAAAAGAAA ACATAAAATG GAAATTTTCT TCCATTGATG AAGCAGAACT TGCATATGAA TTTGGTCATA TAAGGCTTCA CGATCCAATA TTGGTAAAAG TTGATGACAG AGTTATAAAA ACCACATATG GAAGATTAGT ATTTGCAAAT ATCGTTCCAA GAGAATTTAG AGATTATAAC AAAACTTATG GCAAAGGCGC AATAAAAGAC TTAGTATATA AGACGTTTAA GAAATACGGT GTTGATAGAA CCGCTGATCT ATTGGATGAT ATAAAAGATT TAGGGTTCCA CTATGCTACG ATATCAGGGC TTACGGTAAG TATAACCGAT TTTTACATTT CCCCAGAAAG GCGAAGAATA ATAGATGAAG CAAAGAAGAA GATATCAGAA GTAGAAGAAT TATTTGCATT AGGATTTCTT TCCGATGAAG AAAGATACAG AGAAACAATA AAGATTTGGG CAGATGCAAC TGAAAAGGTG CAAGATGCTA CATTTGAATA CATAGGAAAA GATCCATTTA ACCCAGTGTA TATAATGGTA GATTCTGGGG CGAGGGGTAA CAAAGACCAA CTTAAACAAC TTGCTGGTAT GCGTGGTCTA ATGGCTGATC CTTCTGGAAG AACAATCGAG ATTCCAATTA TTTCAAACTT TAGAGAAGGG CTTTCTGTTT TGGAATTCTT CATTAGTACA CACGGTGCAA GAAAAGGTTC TGCAGATACA GCTCTTAGAA CAAGTTCTGC TGGTTATTTG ACAAGAAGAC TTGTAGATGT GGCTCAATCT GTTGTAATAA CTACAACTGA CTGTGGTACT GAAAACGGAG TAAGGGCAAC CGTGTTAAAG AGTAGTGATG GATTAACAGT TGAAAAGTTA GAAGATTTCT TATTTGGTAG GGTCCTTGCA AAAGATGTAT ACGATCCAAA AACAAATAGT GTATTAGTAA ATCCAGAAAA TGGTAAAGAA TACACCAGAG ATACAATGAT CGATGATGAT GATGCAAAAT TCTTGGGGAA TTATTCCGTT AGAATACCAG TTTCAAGAGA GCTTGAAATT AATCTTACAA ATCCTGAACT TCCGGAAAAT TATTGTGAGT TAATTACAGA CTTTATTTAC GATGGTGTAC ATTACGATGA AGGAACAGAA GTGAATTGGG ATATAATTAG AAAGGCTAAA AATTCAGGGC TTGAAAAATT AACAGTGAAA GAATATCCAA TTGTAGGAAA AGTTTCTGTG GAAACAGTGG TAAGTCAAAA AGATATAAAA CAACTAGTAG TAGATGAGGA ATTGATAATG CCAACTACTG CAAAAATTTT AGAAGGACAT AACGTTGAAT CCGTACAGGT AAGACCAGAA ATTATTGTAA GATCCGTGCT CACGTGTGAA GCTGAACATG GCGTTTGTTC AAAGTGTTAC GGAATGGATC TTTCCAACCA TAAAATTATA GGTGTAGGAG AAGCTGTTGG TGTTGTTGCG GCACAATCAA TAGGTGAACC AGGTACTCAA CTTACTATGA GAACATTCCA TACAGGTGGT ATTGCAACAA CTGCAGATAT CACACAAGGG CTTCCAAGAG CGGAAGAACT ATTTGAGGCA AGGAAGAAAT TAAAAGAACC TGAAGGTATA TTTTCAAGGG TGAAAGGATA TGTAAAAGAT ATAGTAGAAG ATGAAACAGG AAAGAAAAAG GTGTACATAG AAGATGAAGC AGGAGACATC CACGAATATG ATATACCAAC AAAAGTGAAG GTTTCAGTAA ATAAAGGGCA AAAAATACTT CCTGGTCAAT CGCTATCAAC TGGTGCAATT AGACCTAGAA AGATACTTGA AACACTAGAT GTGGATACAA CGGCGTTGTA TCTATTGAAG GAAATCAAAA AGGTCTATGT GGAACAGGGT GTTGATATTC ACGATAAACA TTTTGAGATT ATAATAAAAC AAATGCTTGA CAAAGTAGAA GTAATCGATC CAGGAGATAC AGATTACTTA CCAGGAGATC TTTTAAGGCT TCAAATGGTT AAAAGAATTA ACAAACAGAT TTTAGAAGAA AATGTACACG TTGAAACAAA TAGGAAACGC GTGATTGGAA AAATATTACA TCAACATCTA ATAGCGGAAG ACGAAAATGG AGAAATTGTG GAAATAGCCC CTGAAGGTGT TGAAGTTACG GAAGAAATAT TGGAAAAGGC TATAAAATCT GGTATCAAAG AAATTATTGT AAAAAATGGT GATGGAGAGA TAGTTACTTA CCAGATTCTT CCAAAAGAGC CTATAAAATA CAGAAGAAGA TTGCTTAGGA TTACAAAGGC TTCGCTTGAA AGAGTTGGTT GGTTAAGTGC GGCAAGTTTC CAACAAACAC CACAAGTGTT AACGGAAGCA GCAATAGAGG GATCAGTAGA TCATCTCTTG GGATTAAAGG AAAACGTAAT TGTTGGGCAA CTAATCCCCG CAGGAACAGG TCTGGATATG TTTGCAAATA TTCAAATAGA AGAGACGCCG AGGCTTGCTC AAAAAGAAAA AATGGCATAA
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Protein sequence | MMGSTFKRKI SKVTVKVASP EVIRSWSSGE VKKPETINYR TFKPEKDGLF CEKIFGPTKD YECACGKYKG KKYEGTVCER CGVRVESKEA RRKRMGHIDL FAPVVHVWYL KSSPSILSSL LGIQAKELEN VIYYGGKRII EKILIVTNPK DTDFIKGSLL YQTEYEIYNQ KLDFEVMPGV IIKSPVAPVI SSISGEVKIR HEKTHTDREI TWVDVRKISR AEHRVYNGMV LNVKNGDYVN QGDEIVSEMQ IDPIYAPFDG TVEIDEISNT ITIKPLTTSK DMPVTFSLPY GVKPVVPNNS KVKKGDQLTN GTVLPAVIAS VSGNISFGKE LNVRPLEDGK YEVLTSGSVY VENVVEEKHY PLFEGAFVYV KDGDEISEGQ TIADRFLFED EYLTLDEYKI FEQHYPAMFT AESEVENDRP IVVITEIDDE VSVETGLKIG DIITDHQYSA YRTLYNDKIE ADSGASAIKK LLQKLDLEKL KAEIESELKK VSKSSGRAKK LLRRLKIVKD LLKSETKPEW MILEAIPVVP PDIRPMIQVE GGRFATTDLN DLYRRVINRN NRLKKLYEMN SPEIIIKNEK RMLQEAVDSL IYNGRMGKAV TDRNGRALKS LTDLLKGKKG RFRRNLLGKR VDYSGRAVIV VGPHLKIHEC GLPKKMAMEL FKPFVLAELL NKDDETSKTA RKMKKAIIEK EMPQAYEVLE EIIKGHPVLL NRAPTLHRMS LQAFEPKLIE GNAIQLHPLV CPPFNADFDG DQMAVHVPLS AAAQAEAKFL MLSRYNIISP AHGKPISMPG KDIVAGVYYL TMVGKDYDKV QKENIKWKFS SIDEAELAYE FGHIRLHDPI LVKVDDRVIK TTYGRLVFAN IVPREFRDYN KTYGKGAIKD LVYKTFKKYG VDRTADLLDD IKDLGFHYAT ISGLTVSITD FYISPERRRI IDEAKKKISE VEELFALGFL SDEERYRETI KIWADATEKV QDATFEYIGK DPFNPVYIMV DSGARGNKDQ LKQLAGMRGL MADPSGRTIE IPIISNFREG LSVLEFFIST HGARKGSADT ALRTSSAGYL TRRLVDVAQS VVITTTDCGT ENGVRATVLK SSDGLTVEKL EDFLFGRVLA KDVYDPKTNS VLVNPENGKE YTRDTMIDDD DAKFLGNYSV RIPVSRELEI NLTNPELPEN YCELITDFIY DGVHYDEGTE VNWDIIRKAK NSGLEKLTVK EYPIVGKVSV ETVVSQKDIK QLVVDEELIM PTTAKILEGH NVESVQVRPE IIVRSVLTCE AEHGVCSKCY GMDLSNHKII GVGEAVGVVA AQSIGEPGTQ LTMRTFHTGG IATTADITQG LPRAEELFEA RKKLKEPEGI FSRVKGYVKD IVEDETGKKK VYIEDEAGDI HEYDIPTKVK VSVNKGQKIL PGQSLSTGAI RPRKILETLD VDTTALYLLK EIKKVYVEQG VDIHDKHFEI IIKQMLDKVE VIDPGDTDYL PGDLLRLQMV KRINKQILEE NVHVETNRKR VIGKILHQHL IAEDENGEIV EIAPEGVEVT EEILEKAIKS GIKEIIVKNG DGEIVTYQIL PKEPIKYRRR LLRITKASLE RVGWLSAASF QQTPQVLTEA AIEGSVDHLL GLKENVIVGQ LIPAGTGLDM FANIQIEETP RLAQKEKMA
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