Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_0446 |
Symbol | |
ID | 5297939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 467309 |
End bp | 470521 |
Gene Length | 3213 bp |
Protein Length | 1070 aa |
Translation table | 11 |
GC content | 30% |
IMG OID | 640768707 |
Product | O-antigen polymerase |
Protein accession | YP_001305698 |
Protein GI | 150020344 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTACTTTA AAGATATATT TCTTAATATT ACAATTGTGC TAGTTGCACT ATTTGCGAGT CCAAAATTAA CGTATGAATT TAGTGTACCA AAGTATGCTA TATTAACCTT TGCTTTCTCG GTTTTATTTA CATATCTTGC GGCAAAAGTA ATAAAAGAAA AAAAGATAAG TATCTATATA TCACCTGCTC ATATAATTTG GTTTTTCTTT GCAATTTCTT CCATAATTTC AAGCTTTAAC ACACTTAGGG ATAACCCATT TTATTTTAGA CAATCGTTTG ATATAGGTCT TTATGTTTTG TTTAACGTAC TTGTTGCTTT TTACATAAGT AGTGAATATA ATGAGAAAAA GAGAATAAAT ATTCTTCTTT TCACATTTAT GTTGACAGGG TTATTTATTT CAATAGATGC TCTCTTAAAT TTTTATATAG GGTATGATAT TTTTCTTGGT AAAGTAGGCC AACCACTTTC TAGAGGTTCA ATAAAAGCAA GTGTGGGAAA TGTCATCTTT GTTGCAAACT ACATTGATAT GCTTCTCCCA ATTGCGCTTT ACTTTTTACT TGCATATGAT TTAGGAGTAA AAAAATTTTG GCAAGTTAGT TTGATAAAGT TATCTTCGCT GGTAAGTTTT ATCTTGGGAT TAATGGCTGT TATAGTTTCA CAGACAAGGT CTGAGTATCT TGCAATAATT GTCATGAGTG TTATGTATGT CATTTTCTAC TTTGTTTGGA GAAAGAAGTC TTCTCCAATA CCACAGATAA AAAAATTGAC AAACTTACTT TTAATAGTTT TGTTAATTGT TTCAGTATTT ATAGTTTTAA TATACAATAC GGAAAATCCT TTGACTGGAC AAGGTAAGGT AAATATGACT AATAGATTTT CTGCTATGGC CTCAGTTTCA AGTAGAGATG AAAGATTCCT TTCTTGGTTT ACGTCGCTGG AGTTATGGGA AGATCACAAA ATATTTGGAA CGGGAATAGG GACGTACCAA CTTTTATCAC TTACAAAGAT GGGAGAATAC CTTGAAAAGC ACCCAGAATT ATACTACGGT TGGAACAATT TTAAAAGAGC ACACAACGAT TATTTCCAAG TACTTGGTGA AACGGGAATC GTTGGTCTTT CCCTTATAAT ACTCCTTTTA GCTTTTCTTG TGTATTACTT TTTTACCATT CCAAAGAAAA TTGAAAACAG AGATGATTTG TTACTTTTCT TATCACTTTC TATTTCAATA GTCGGTTTTT CCATACAAAG CTTTTTCAGC TTTCCGGGAC ATCTTCTTCC AAATGCCCTT GCGGCAATTG TTTTTGTTGG TATAGCTATA GGACCGTATT TTACAAAAAA ACCTTTAAAA GAAATAAAGA ATACAAAAGC AATTTTATTA ATGTTATTCA TTTTAACAGT AACATATGCA TCAACTTATT TAAGATGGAA TCACTTTATT TCAGAAGTCT ATTTCAAAGA AGGAAATGCA GCTTATTTAA CCTTTGCAAA GATAATGGAA GAATATCCAA AAGCGGCAGA TTATATATCA CAACTTGAAG AAAAACTTAA AGATTTGAAT AAACAACAAA GTGAATTTTA TTATCTTAAC AAAGATGTAT GGAAAAGGCA AAAGATTGAA GAATACAAAA GCAAGAATTT GCCATACAAT GAGTTTGAAA TAGAAAATCA AAGGATTGCA CAAATAAACA AAATAAAAAA TCAGCTTTTG TCACAAATTG AACAGATAAA AAAGCAAAGA TCGCAACTTC CATCATTGGC AAAAGATTAC TATATAAAAG CCAAAAAGAA CTTGCTAAGG AGTGTTACTA TTAACCATAC ATATGGAAAA TCATACTTTT ATCTTGCAAC ATTAGCGGTG CAAGATTTTA GGATTAATAT TCTAAAAAAC AACATAAAAG AACATTATGA AAAAATATTT AACCAGGATT TTGATGAATT TCAAAAAATA ATTCATAATA AAACTAAATG GTTAAGTGTG CTTGTACCAT ACATAAAAGA TCGCAGTGAA ATTTTAGACA AGTTTGATTT TGCAACAGCA CAAGCTGTTA TAGATTCTAT TGGTATATAC GAAACTTCAC TTCTTTGCTT TAACGAGAGA AATACCTACA AAGCAATAGC CATGAGATTT CATTCGCTAC ATGTTTTGTT AAAGGAATTA TTAAATTACA TAGATGAAGA ACAATATAAG GAAAAAATCA AAAAGTTAGT TGTAATAGCG TTTGATAAAT ATGTTGAGTA TGCAAAGAAA ACATTAACCA ACATGCCAGG TGGTTGGAAT AGATTTTCCG ATTGGAAAAA TCCAGATATT TCAAAAGCAA CACGTGGTGA GGATATTTAT AGATTTTTTG CCAGTATGAC GTTCAAACTA CAACCTCCAA TACTAAAACC CGTTTACGAG TTTACAGAAT GGCTTGCAAA AATGGAAATA AAAGCGGCTA AATACATGAA CTTGAAAAAT GTCTGGGGAG TTCCAAATGG AGTGATAGAT TTCTTGCATG CCACTTCATT TGAGTATTAT AAAACTGGAG CCATACAGGA AGCAATATAT ATTTTAGAAA AACTTCACCA CATGTACAAA GAGTCTTTCT TAATTTCAAG TGAGAGGATT TTAAAGTATA AAGAAGCACT TGATAATCAA ATTGGAGCTT TAAAAGAAAA ATATTCAAAG AATATTGAAA ATGTTTTAAG TGAAATTCCA AGTAGTGGAC GAAAAGTAAT AGTTAGGAAT TTTGAAGAAG CAGTTGATAA GGCAAATGAG GAGTTTAAAA GATACAACTA TATTGCAGTT GAAGCAGATT ACATGAAAAA ACTCATTTCA CAAAAACCTC AAGACTGGTA CAATGTATCA AAGAATAGTA TTTGGAGCAT GATAATGGTA AAACATTTAA ACAATTTCCT TTCTAACTTA CAAAAAATGG GTGTACACAC TCAGATAATA ATCAATATTA AGAATGAAAT ACAAGGATTA ATTAATATAC CAAGTTATGC AAGTATTTAT GAATCTTATG CAAGATTCAT AGCACATTAC AAATTAATAG AAAATGATTT AAAATTTAAC GCAGAGAAGT TAATTAACAC ATACTCAGAA ATGACAGATA ATATGTGGGA AAACGTTATT AAGGATTGGG GAAACGTTCT TTTAGATGAA GGAACACCTT TAACCACAAA AGAGGATATA TTGAATTTTC TTAAAAAAAT TTCTGGGAGG TGA
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Protein sequence | MYFKDIFLNI TIVLVALFAS PKLTYEFSVP KYAILTFAFS VLFTYLAAKV IKEKKISIYI SPAHIIWFFF AISSIISSFN TLRDNPFYFR QSFDIGLYVL FNVLVAFYIS SEYNEKKRIN ILLFTFMLTG LFISIDALLN FYIGYDIFLG KVGQPLSRGS IKASVGNVIF VANYIDMLLP IALYFLLAYD LGVKKFWQVS LIKLSSLVSF ILGLMAVIVS QTRSEYLAII VMSVMYVIFY FVWRKKSSPI PQIKKLTNLL LIVLLIVSVF IVLIYNTENP LTGQGKVNMT NRFSAMASVS SRDERFLSWF TSLELWEDHK IFGTGIGTYQ LLSLTKMGEY LEKHPELYYG WNNFKRAHND YFQVLGETGI VGLSLIILLL AFLVYYFFTI PKKIENRDDL LLFLSLSISI VGFSIQSFFS FPGHLLPNAL AAIVFVGIAI GPYFTKKPLK EIKNTKAILL MLFILTVTYA STYLRWNHFI SEVYFKEGNA AYLTFAKIME EYPKAADYIS QLEEKLKDLN KQQSEFYYLN KDVWKRQKIE EYKSKNLPYN EFEIENQRIA QINKIKNQLL SQIEQIKKQR SQLPSLAKDY YIKAKKNLLR SVTINHTYGK SYFYLATLAV QDFRINILKN NIKEHYEKIF NQDFDEFQKI IHNKTKWLSV LVPYIKDRSE ILDKFDFATA QAVIDSIGIY ETSLLCFNER NTYKAIAMRF HSLHVLLKEL LNYIDEEQYK EKIKKLVVIA FDKYVEYAKK TLTNMPGGWN RFSDWKNPDI SKATRGEDIY RFFASMTFKL QPPILKPVYE FTEWLAKMEI KAAKYMNLKN VWGVPNGVID FLHATSFEYY KTGAIQEAIY ILEKLHHMYK ESFLISSERI LKYKEALDNQ IGALKEKYSK NIENVLSEIP SSGRKVIVRN FEEAVDKANE EFKRYNYIAV EADYMKKLIS QKPQDWYNVS KNSIWSMIMV KHLNNFLSNL QKMGVHTQII INIKNEIQGL INIPSYASIY ESYARFIAHY KLIENDLKFN AEKLINTYSE MTDNMWENVI KDWGNVLLDE GTPLTTKEDI LNFLKKISGR
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