Gene Tmel_0257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTmel_0257 
Symbol 
ID5297117 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermosipho melanesiensis BI429 
KingdomBacteria 
Replicon accessionNC_009616 
Strand
Start bp260764 
End bp261444 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content28% 
IMG OID640768513 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001305516 
Protein GI150020162 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAACA TATTCTTTGG AATACCCAAA AAAGATATAT TAATTTTTGA TGAACATGAA 
ACAATACATT TTAAAACTGT AAGAATAAAA GAAGGAGATA TAGTCAAAAG TACCGATGGT
AAAGGTGGTG AATTTCTGGT AAAGATTGAA AAAATAAAAA AAAAGAAATC TTTTGGAACA
ATTTTAGAGT CTAAATATAT AGAGAAAGAT GAAAAAAGTA ATTTGGTGTT ATTTGCTCCT
TCGGGAAAAT GGGAAAGACT TCGTTGGCTA ATTGAAAAAT CCGTTGAATT AGGTGTTGAC
AAAATCTATA TCACAAAGAC AAAATATTCT AATAGAGATT ATCGTGATAA AGAAGAAAAA
ATTTCGCTGG TAATCAGAAA TAGTGCAAAA CAATGTATCA GATATCATTT CCCCGAATTT
AAGTTTATTA GCTTCAAAGA AATTGAAAAA TATGCAAGTA TTAATACATA TTTTCTAGAC
TTTGAAGGAG AAAACATACC AGAAATAATT CACCCAAATA CCTCATTTAT AGTTGGCCCA
GAAGGGGGAT TTTCAGAAGA TGAAAAGAAA TTTTTAAATG TTAACTTTAC ACCTGTTGTT
TTAGGGAAAA AAACATTGAG ATTTGAAACA GCTGCTTTTG TATTTCTAAG TTACCTTTCC
ATTAAACTTG AAAAAATTTA A
 
Protein sequence
MPNIFFGIPK KDILIFDEHE TIHFKTVRIK EGDIVKSTDG KGGEFLVKIE KIKKKKSFGT 
ILESKYIEKD EKSNLVLFAP SGKWERLRWL IEKSVELGVD KIYITKTKYS NRDYRDKEEK
ISLVIRNSAK QCIRYHFPEF KFISFKEIEK YASINTYFLD FEGENIPEII HPNTSFIVGP
EGGFSEDEKK FLNVNFTPVV LGKKTLRFET AAFVFLSYLS IKLEKI