Gene Tmel_0257 details

Gene Information

• Locus tag: Tmel_0257
• ID: 5297117
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermosipho melanesiensis BI429
• Kingdom: Bacteria
• Replicon accession: NC_009616
• Strand: +
• Start bp: 260764
• End bp: 261444
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 28%
• IMG OID: 640768513
• Product: 16S ribosomal RNA methyltransferase RsmE
• Protein accession: YP_001305516
• Protein GI: 150020162
• COG category: [S] Function unknown
• COG ID: [COG1385] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR00046] RNA methyltransferase, RsmE family

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAACA TATTCTTTGG AATACCCAAA AAAGATATAT TAATTTTTGA TGAACATGAA 
ACAATACATT TTAAAACTGT AAGAATAAAA GAAGGAGATA TAGTCAAAAG TACCGATGGT 
AAAGGTGGTG AATTTCTGGT AAAGATTGAA AAAATAAAAA AAAAGAAATC TTTTGGAACA 
ATTTTAGAGT CTAAATATAT AGAGAAAGAT GAAAAAAGTA ATTTGGTGTT ATTTGCTCCT 
TCGGGAAAAT GGGAAAGACT TCGTTGGCTA ATTGAAAAAT CCGTTGAATT AGGTGTTGAC 
AAAATCTATA TCACAAAGAC AAAATATTCT AATAGAGATT ATCGTGATAA AGAAGAAAAA 
ATTTCGCTGG TAATCAGAAA TAGTGCAAAA CAATGTATCA GATATCATTT CCCCGAATTT 
AAGTTTATTA GCTTCAAAGA AATTGAAAAA TATGCAAGTA TTAATACATA TTTTCTAGAC 
TTTGAAGGAG AAAACATACC AGAAATAATT CACCCAAATA CCTCATTTAT AGTTGGCCCA 
GAAGGGGGAT TTTCAGAAGA TGAAAAGAAA TTTTTAAATG TTAACTTTAC ACCTGTTGTT 
TTAGGGAAAA AAACATTGAG ATTTGAAACA GCTGCTTTTG TATTTCTAAG TTACCTTTCC 
ATTAAACTTG AAAAAATTTA A 

 

Protein sequence

MPNIFFGIPK KDILIFDEHE TIHFKTVRIK EGDIVKSTDG KGGEFLVKIE KIKKKKSFGT 
ILESKYIEKD EKSNLVLFAP SGKWERLRWL IEKSVELGVD KIYITKTKYS NRDYRDKEEK 
ISLVIRNSAK QCIRYHFPEF KFISFKEIEK YASINTYFLD FEGENIPEII HPNTSFIVGP 
EGGFSEDEKK FLNVNFTPVV LGKKTLRFET AAFVFLSYLS IKLEKI