| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0252 |
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| Symbol | |
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| ID | 5297506 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermosipho melanesiensis BI429 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009616 |
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| Strand | - |
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| Start bp | 252962 |
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| End bp | 254803 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 640768508 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001305511 |
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| Protein GI | 150020157 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGATTATA TTGAATATAT TAGAAAATTA GATTATCAAG AATTGGAAAG ATTTGCCAGT
GAAATTAGAA GGTATATAAT TAATGTTGTT TCGAAAAATG GTGGACATTT AGCGCCAAAT
CTTGGTGTTG TGGAATTGAC CCTTTCATTG TATAGAGTAT TTAATCCATA CGAAGATTAC
ATAATCTGGG ATACAGGTCA CCAAACATAT GTTCATAAGT TGTTGACAGG TAGATGGGAT
TTATTTCCAA CAATTAGGAA GTTTGATGGG TTAAGTGGAT ATACAAATAT ATTTGAATCG
GAATATGATA GATTTGGAGC AGGCCACGTA GGAACGGCTA TTGCAGCAGC ATTAGGTATT
GAAAAAGCTT TAGAATTGAA AGGAAAAAAA GCAAATGTTG TTGTAGTTAT TGGGGATGGT
GCACTTACAT CTGGCGAGTC TTTGGAAGCT TTAAACCAGA TAAAGACATT GAATTCAAAA
TTAAAGATAA TAGTGAATAA TAACTCTATG TCTATATCAA AGAATGTGGG TGCACTCTCC
CACTTTTTGG AAAAATTAAG GACAAGTAAA TTCTATCTTG ATACTAAAAA AACAATGAAA
AGGGCTTTTT CAAAGGGATT TGAAGAAGAA TTGAAAAAAA TAAGAGATGC TCTAAAAGTT
ACTTTAACTG GAGAGGATTT TTTTGAAGGC CTGGGTTTAA AACATTTTGG ACCTATTGAT
GGACACAATT TTAAAGAATT AGAAGATGAA TTTAGAAGAA TAAAAGATTA TGATTATCCT
ACAGTTGTTA CCGTTAATAC TGTTAAAGGA AAGGGATTTA AAAATTCTGA ATCTAATCCA
GAAAAGTTCC ATAGTGCTTC GAAATTTGAT ATATCATCCG GAACTTTCTT AAAAGAAAAA
GGTATAATTT CATATAGTGA AGCATTTGGA AGGACACTTA GTAAATTAGC AGAAAAAGAT
GATAAGATAA TAGTAATTAC AGCTGCAATG AAATCTGGAA CGGGTTTAAA AGAATTTTCA
GAGAAATTTC CGAAAAGGTT TTTTGACCTT GGAATTACTG AGCAAATGTG TGTAACATTT
GCTGGTGGGT TGGCAACAAT AGGTATGAAA CCTGTATTTG CCGTTTACTC AACATTTTTA
CAACGGGCAT TCGATCAGAT AATACATGAT ATAGCACTTC AAAGACTTCC TATTATTTTT
GCAATTGATA GGGCAGGTGT GGTTGGCGAA GATGGGCCTA CTCATCATGG AGTTTTTGAC
ATAGCGTATT TGAGAATGAT TCCCAATATC AAAATTTATG CGCCAAAAGA CGTCCAGGAT
TTGATGAATA CACTGTATAC TTTATTAAAT ACAAAACTTG GAGGACCTGT TGCGATTAGA
TATCCAAGAG ATTATGAATT TGGAGATTTT GAGGAGTTAT GTGATAAAAT AAATATGGTA
GATGTTGATA AGTGGAAGCT TTTAAATGAA GGAAAAGATG TTGCGATTAT TTCTACGGGT
TTTCCCACAA AAGCAGCTTT AAAAGTTGCA AGGAAAAACA ACTTTACTTT GGTTTTTGCA
AGAAGTATAA AACCAATTGA TGTGGAAATG TTGAAGTGGG TTTTTGAAAA TCATAATGTT
GTTTTCTCAG TTGAAGAAGG TGTAAAAATA GGAGGATTTG GTGAAGGATT ATTAAGTTAT
GGAAATGTTG AAGTAATTGC AATAGATGAT GAATTTGTTC CGCATGGTTC AAGAAAAGAA
CTTTTAAAAT ATTTAAATCT TGATGTAGAA GGTATTGAAA GGCGTATGAG AAAAGTACTT
GAGAGGAGGA ATATATATGA AAATGCAAAC AGAATACGGT GA
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| Protein sequence | MDYIEYIRKL DYQELERFAS EIRRYIINVV SKNGGHLAPN LGVVELTLSL YRVFNPYEDY
IIWDTGHQTY VHKLLTGRWD LFPTIRKFDG LSGYTNIFES EYDRFGAGHV GTAIAAALGI
EKALELKGKK ANVVVVIGDG ALTSGESLEA LNQIKTLNSK LKIIVNNNSM SISKNVGALS
HFLEKLRTSK FYLDTKKTMK RAFSKGFEEE LKKIRDALKV TLTGEDFFEG LGLKHFGPID
GHNFKELEDE FRRIKDYDYP TVVTVNTVKG KGFKNSESNP EKFHSASKFD ISSGTFLKEK
GIISYSEAFG RTLSKLAEKD DKIIVITAAM KSGTGLKEFS EKFPKRFFDL GITEQMCVTF
AGGLATIGMK PVFAVYSTFL QRAFDQIIHD IALQRLPIIF AIDRAGVVGE DGPTHHGVFD
IAYLRMIPNI KIYAPKDVQD LMNTLYTLLN TKLGGPVAIR YPRDYEFGDF EELCDKINMV
DVDKWKLLNE GKDVAIISTG FPTKAALKVA RKNNFTLVFA RSIKPIDVEM LKWVFENHNV
VFSVEEGVKI GGFGEGLLSY GNVEVIAIDD EFVPHGSRKE LLKYLNLDVE GIERRMRKVL
ERRNIYENAN RIR
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