| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2479 |
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| Symbol | |
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| ID | 7317175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 2632950 |
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| End bp | 2634704 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 643617383 |
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| Product | putative diguanylate cyclase |
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| Protein accession | YP_002514544 |
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| Protein GI | 220935645 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATC GCCACCCCGA TCGCCGCCGG CCCCTGCGCG GCGGACTCAG GCTGCAGACG
CGTGTGACGC TCTGGCTCCT GCCCATGATC GTGGCGCCCC TGCTGCTGCT CGGCTGGCTG
GCCTACGTGC AGTTGCACGA CCAGCTGAGG GAGCAGCACC TGGCGCGCAT GGACACCCTG
CTGGAGCAGA TGGATCTGCA CATGCAGTCC AAGATCCGCA CCGCCGAGGC CAATGCGCGC
CTCATGATGA GCAATCCCCT GTTCCAGAAT TACATGCGTG CGGATGATGA GTTCGAGCGC
TATGAGCTGC TCTACGGGCC GCTGCTGCGC CTGCTGGACA GTTATCAGCA GGCCCACCCC
GACCTGCGCG AGGTCCGCCT GGCCCTGTCC GACGGCACCG AGGACGTGCG CTGGGTGCGC
GCCGGCCGTG CTTCCAGCGA GGGTCTGCCG ACCGCCTCGC TGCTGGGGCT CGAGGCTGAT
GGTGTGCAAC TGGTGCATGA TGCGCAGCTG GGGCAGAGCC TGCTGATGGT GAGCCGGCCG
GTGATGCTTC GCGACGTGCG CACCGATCCG GTGGCGACCC CCTTGCAGCA TTACGGCTAC
CTGCTGCTGC TCATGGACCT GAGCCTAGTA CAGGAGCAGA TGTTCGCCTA CCAGCGGGCA
GGCCAGGGCA ATCTGCTGGC GGTCAATCAC GGCGGTGAGG TGCTGCTGGC CGCCTGCGGC
GTGGACGCGG GTGCCGAGGC CCTGCTCGCG GACCTGCCGA AGATCGCGGC CGAAGGTCTT
GCCGACCTGC GCACCGGCGA CGCGGATCCG GTGATCCGGC AGGGTCGTGA CTACATCCGT
GTGCGCGCCC TGTACCCGGA CCATCTCTGG CTCGGCCACG TGCCGGGAGA ACAGATCGCC
CAGGCCACCC GGGGCCTTGG CTGGCTGGTC CTGCTGGTGG TGTTTGTGGC CACCGCCGGC
ACCTTCCTGA TGGTGCAGCT CGCCCTGCGC GTCCTGGTGC TCAAGCCACT GGCCACGCTT
GAGCGCGCGG CCTTGCGGAT CGGGGAGGGC AGCTGGGATT TTCCGGCCCT GCACCGTCGC
GGGGACGAGA TCGGCGGTCT CATGCAGGCC TTTGAGCAGA TGGTCGACAG GCTTCAGGAC
AGTCATCAGC AGATTCACCA CATGGCCTAC CACGACGAAC TCACCGGCCT GGCCAACCGC
AAGCAGTTCA ACGATCACCT GAGCCGGGCG GTGGATCTGG CACGCCGGCA GGGTGAACGC
TTCGCGGTGC TGTTCCTGGA CCTGGATCGA TTTAAGGACA TCAACGACAC CCATGGCCAT
GACATGGGTG ACCGGGTGCT CAGGCACTTC GCGGAGCTGG TCAGTGCCTG CGTGCGCGAC
CAGGACTACG TGGCCCGCGG ACAGCCCGTG CCGTCACCCG GCTCCCGGGA GGCCGACGGG
GAGATGGTGG CGCGCCTGGG GGGCGATGAG TTCATCGTCC TGCTGCGCGG CCTGCATGCA
CCCGCCGACG TACTCAGGGT GACGGGGCGG ATCCTCCAGG GACTGGAGCA GCCCTTCGTC
CACGAAGGGG TCACGCTGAT GCTGCGCACC AGTATCGGCG TGGCCTTCTA TCCCCAGGAC
GGCGACAACG CCGAGCAGCT CATGCAACGC GCCGATTTCG CCATGTACCG CGCCAAGCAG
GACGGCACCC ACCGCGTGTG GTTCTACCGG GATGCCCTGG TGGAAGAGCA CCGGGATCTC
ATGGATCTGC AGTGA
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| Protein sequence | MSDRHPDRRR PLRGGLRLQT RVTLWLLPMI VAPLLLLGWL AYVQLHDQLR EQHLARMDTL
LEQMDLHMQS KIRTAEANAR LMMSNPLFQN YMRADDEFER YELLYGPLLR LLDSYQQAHP
DLREVRLALS DGTEDVRWVR AGRASSEGLP TASLLGLEAD GVQLVHDAQL GQSLLMVSRP
VMLRDVRTDP VATPLQHYGY LLLLMDLSLV QEQMFAYQRA GQGNLLAVNH GGEVLLAACG
VDAGAEALLA DLPKIAAEGL ADLRTGDADP VIRQGRDYIR VRALYPDHLW LGHVPGEQIA
QATRGLGWLV LLVVFVATAG TFLMVQLALR VLVLKPLATL ERAALRIGEG SWDFPALHRR
GDEIGGLMQA FEQMVDRLQD SHQQIHHMAY HDELTGLANR KQFNDHLSRA VDLARRQGER
FAVLFLDLDR FKDINDTHGH DMGDRVLRHF AELVSACVRD QDYVARGQPV PSPGSREADG
EMVARLGGDE FIVLLRGLHA PADVLRVTGR ILQGLEQPFV HEGVTLMLRT SIGVAFYPQD
GDNAEQLMQR ADFAMYRAKQ DGTHRVWFYR DALVEEHRDL MDLQ
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