| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_2391 |
|---|
| Symbol | |
|---|
| ID | 7317087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011901 |
|---|
| Strand | - |
|---|
| Start bp | 2525421 |
|---|
| End bp | 2527013 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643617289 |
|---|
| Product | lipopolysaccharide biosynthesis protein |
|---|
| Protein accession | YP_002514456 |
|---|
| Protein GI | 220935557 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
|---|
| TIGRFAM ID | [TIGR03007] polysaccharide chain length determinant protein, PEP-CTERM locus subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAGT TGATCGAAAA GCTGTTGTTA CTGATACGCG GAATGTGGCG ATTCCGTTGG
TATGGAATCC TCGTCGCGTG GCTGGTCTGC ATAGCAGGAT GGTACGGACT CTCCAAGGTG
GATAATGTCT ATGAGGCGAG TGCCACGGTG TACGTCGATA CCGACTCTAT GCTACGTCCG
CTGCTGCGGG GGCTGGCGGT GGATATCAAT GTGGGTGAGA AGCTGGGCCT CATGAGTCGC
CAGCTCCTGA GTCGCCCCAA TCTTGAGAAG GTCATCCGTA TGACCGATCT GGATCATGGT
GCGACTACGC CCGCAGCACA GGAGCGGATC CTTCAAGACC TCACGCGCAA CGTCAATCTG
CAACAGACGC ACGCCGCCCG GCCCCTGGCA CCCAGGAGCC CGGACCTCTA TGTGATCAGT
TCGCGTCACA AAGATCCGGA GATGGCACGC AGAATCGTCG AAGCGTTACT TTCGACCTTT
GTGGATGAAA CCGCTGGAGA GAGACGGCAG CGTAGCGATG TTGCCCAACA GTTTCTTGTC
CAACAGATTG CAGAGTATGA ATCCCGTCTG GTCGAGGCGG AAGACCGACT CAGAGAGTTC
AAGCGCGAGC ATATCGACGT GCTTCCTGAT CAGGAAGCCA ATTACTATGG CCGACTGCAG
GCAGCAAGGT CTAACCTTGA GGCAGTGGAG CTTGCGTTAC GCGAGGCCAA TTTCCGTCGC
GACGAATTGC GTCGTCAGCT TGAGGGAACT CCTTCCACGC AGCGCGGCTT GTCAGCTGAC
GGCGCTCTTG TGCAGACGCC CACGGAAGAG CGCTTGCTTA CTCTGCAGAG ACGCTTGGAC
GAGTTGCTTC TTCGTTTCAC GGAGAACCAC CCGGACGTCG TCCAGACGCG CCGCAGTATC
GAAGCCCTGG AAGTGCAGCG CGATCGAGAA CTCTCGGGCA TAGATCCCGC TTCCAGTAGC
TCAGCGGTGG CCAATCCGCT GCACCAGCAG TTGCGACTTG CCCTCGGAGA GGTGGAAGGC
GAGATCGCCG CGCTCAGGGT GCGTCGCGAT GAGTTCAGCA CGCGTGTCCA GCGATTGCAG
CAGCAGCTGG AGATCATTCC CCAGGTTGAG GCGGAACTGC GGCGTCTGGA TCGCAACTAT
GAAATCTACC GCGATCAGTA CAATTCCCTT GTTGCCCGTC GTGAGTCTGC CCGGATATCT
GAGGACGTGG AGCAGACGGG CCAGGATGTG CGTTTCCGCG TCATTGAACC ACCTCGTACA
CCGGCCACCC CCATCTTTCC TGGCAGGCTC AAATTTTCCG CGGCCATCCT GCTGATGGGC
CTTGGCGCCG GAGCCGGCGT TGCATTGCTC ATGTCCCAGC TGTTTCCGGT GGTCCACGGC
CGACGCATGC TTGGTGACTT GAGCGGGCGG CCCGTATTCG GTGCTGTAAC CAGGGTATTG
ACGCCTCGGG CACGCTGGAT GATGCGTCTT GATTTTGCGG CGTTTGCTAC GGTTATCGCC
TTGATGATTC CGGCCTTCCT GATGGCTGTG TACATGCAGC TGACGGGCCG CAGCCTCATG
GCTGCGGTGA CATCACTGGG GGGCCTTGTG TAA
|
|---|
| Protein sequence | MQKLIEKLLL LIRGMWRFRW YGILVAWLVC IAGWYGLSKV DNVYEASATV YVDTDSMLRP
LLRGLAVDIN VGEKLGLMSR QLLSRPNLEK VIRMTDLDHG ATTPAAQERI LQDLTRNVNL
QQTHAARPLA PRSPDLYVIS SRHKDPEMAR RIVEALLSTF VDETAGERRQ RSDVAQQFLV
QQIAEYESRL VEAEDRLREF KREHIDVLPD QEANYYGRLQ AARSNLEAVE LALREANFRR
DELRRQLEGT PSTQRGLSAD GALVQTPTEE RLLTLQRRLD ELLLRFTENH PDVVQTRRSI
EALEVQRDRE LSGIDPASSS SAVANPLHQQ LRLALGEVEG EIAALRVRRD EFSTRVQRLQ
QQLEIIPQVE AELRRLDRNY EIYRDQYNSL VARRESARIS EDVEQTGQDV RFRVIEPPRT
PATPIFPGRL KFSAAILLMG LGAGAGVALL MSQLFPVVHG RRMLGDLSGR PVFGAVTRVL
TPRARWMMRL DFAAFATVIA LMIPAFLMAV YMQLTGRSLM AAVTSLGGLV
|
|---|
| |