Gene Tgr7_1946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTgr7_1946 
Symbol 
ID7316335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThioalkalivibrio sp. HL-EbGR7 
KingdomBacteria 
Replicon accessionNC_011901 
Strand- 
Start bp2067081 
End bp2067755 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content67% 
IMG OID643616839 
Productanti-ECFsigma factor, ChrR 
Protein accessionYP_002514014 
Protein GI220935115 
COG category[T] Signal transduction mechanisms 
COG ID[COG3806] Anti-sigma factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.00378013 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGAAGA CTATTGATGA CCTGGCGGAC GTGAACGCCG ATCCGCACGA GGCCGCACGG 
GTCGACACCG GGGTGATGGC CTGGGAGCCG AGCCCCAGCG GCACGGTATG GCGCAAGCCG 
CTGTACCGCA GTGGCGGCGA GTTTGGACCG GTGACCAGCC TGGTGCGTTA CGCTCCTGGC 
GGGGCATTCC GTCCCCACAG TCATCCCGAG GGCGAGGAGA TCCTGGTGCT GGACGGGGTG 
TTCGCCGACG AGCACGGTGA GTACCGGGCC GGCACCTGGT TCCTGAATCC GGACGGCAGT 
AGCCATGCAC CGCGCTCGGA GCCTGGCTGC GACCTGTTCG TGCGGCTTCG TCAGTACCCC 
GGCCGCGATC GGGCCGCGCG CTGTCTCGAC ACGGACCGGA TGGACTGGGT GGAGACCGGT 
GTGCCGGGGG TCCAGGAGAA GGTGCTCTAC CGGGAGTCGG GCTATCCTGA AGATGTGTGT 
TTGATGCAGC TGGCCAACGG TGCCTCGCTG CCGGTGCCGG GCGACGGCAT CATCGAAATC 
CTGGTGCTTG AGGGTGAGTT GCGCGGTCCC GATGGCGTTG TCGCCACAGG TACCTGGATG 
CGAGCACCAG CCGCAGGTGC AGGTTCCTGG CTGGCGGCGG GAGACTGCCG GCTGTACCGG 
CGTATCGTCA CCTAG
 
Protein sequence
MQKTIDDLAD VNADPHEAAR VDTGVMAWEP SPSGTVWRKP LYRSGGEFGP VTSLVRYAPG 
GAFRPHSHPE GEEILVLDGV FADEHGEYRA GTWFLNPDGS SHAPRSEPGC DLFVRLRQYP 
GRDRAARCLD TDRMDWVETG VPGVQEKVLY RESGYPEDVC LMQLANGASL PVPGDGIIEI 
LVLEGELRGP DGVVATGTWM RAPAAGAGSW LAAGDCRLYR RIVT