| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tgr7_1358 |
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| Symbol | |
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| ID | 7317850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thioalkalivibrio sp. HL-EbGR7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011901 |
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| Strand | - |
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| Start bp | 1457279 |
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| End bp | 1460752 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 643616248 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002513430 |
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| Protein GI | 220934531 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.450147 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGTCC TGTACAGTCC CCTCACGCCA CCCGCCCTGC CCGACAAGCC CGGCCAGCAT
CGCTGGGGCC GCCTCTATGG CGCCGCCCGG GGCCTTGCCA TGGCCCGTGC CCTGGCGGGG
CACAAGGGGC TGGGTGTGGT GATCACACCG GATACCCGGG AGGCTGAGAC CCTGGCCCGG
GAACTGGAAT TCTTCCTGGG CGACGACAGC CTGCCGGTGC TCACCCTGCC GGACTGGGAG
ACCCTGCCCT ACGACCTGTT CTCCCCCCAT GAGGACATCA TCTCCCAGCG CCTGGAGACC
CTCTACCGCC TGCCGGACCT GAGCCGGGGC ATCCTGGTGG TGCCGGTCAA CACCCTGATG
CAGCGCATCG CGCCCCGGGC CTGGCTCCAG GGACGCGTGC TGATGCTCGC CAACGGCGAC
CGGCTGGATC GGGACGCCCT GCGCCGCAAC CTGGAACAGG CGGGCTACCA CTGCGTCAGC
CAGGTGATGG AACACGGCGA GTTCGCCGTG CGCGGCTCGC TCATCGACCT GTTCCCCATG
GGCAGCCTGG AGCCCTACCG GGTGGACCTG CTGGACGATG AAATCGAGTC CATCCGCAGC
TTCGACCCCG AATCCCAGCG CAGCCTCGAC AGCGTGAACG CCGTGCGCCT GCTGCCGGCC
CACGAGTTCC CCATGGACGA GGCCGCCATC AAGGGCTTCC GCCAGCGCTA CCGCACCCGC
TTCGAGGGCG ACCCCCAGGC CAGCATCATC TACCGGGACG TGAGCCAGGG GATGGCACCG
GCGGGCATCG AGTACTACCT GCCCCTGTTC TTCGAACAGA TGGACACCCT GTTCGACTAC
CTGCCCGGCA ACGTGCGCCT GATCCAGGTG GGTGGCATCG AGGACACCGC CGCCGAGTTT
CTCGCCCAGG CGGCGCAGCG CCATGAGCAG CGTCGCCACG ACCGTGAGCG CCCCATCCTC
TCGCCCGAGG AGATCTTTCT CACCGCCGAG GAACTCAAGG CCCAGCTCAC CGGGCGCCCG
GGTATCCGGG TGGAACGCCC CGAGCAGCTG GACGCCACCC CCGGCGCGGT GAACTTCGAC
GTGGGCGCCC TCCCGGACCT GCGCCTGCAC ATCCGCCAGT CCGATCCGGC GGCCTCACTC
AAGACCTTCC TGGACGGCTT CGACGGCCGC GTGCTCATTG CCGCCGAGTC CGCCGGACGC
CGGGAATTCC TCGTCGACAG CCTGCGCCCC TTCGGCCTGC CCCCCACCCC GGTGGAGGAC
TGGCAAGGTT TCGTGAGCGG CGACGCACGC CTGGCCATCA CCGTCGCGCC CGTCGAGGAC
GGCATGCGCA TGGCCTGCTG CGGACTGGCG GTCATCACCG AACCCGCCCT GTTCGGCGAG
CGGGCCCACC AGGAGCGCCG GCGCAAGCGT CCCACCCGGG ACGCGGACGC GGTCATCAGC
AACCTCACCG ACCTGCATCC GGGCGCCCCG GTGGTGCACG AGGAACACGG CGTGGGCCGC
TACCTGGGTC TGCAGAAGCT GGCCGTGGGC GGCCAGGAGA CGGAGTTCCT GGCCCTGGAA
TACGCCGGCG GCGACAAGCT TTACGTGCCG GTGTCCTCCC TGCACCTGGT GAGCCGCTAC
ACCGGCGCCG ACACCGAACA CGCCCCCCTG CACAAGCTGG GCGGTGAGCA ATGGGCGAAG
ATCCGCCGCA AGGCCGCGGA GAAGGCCCGG GACGTGGCCG CCGAACTGCT GGAGATCTAC
GCCAGACGCG CCGCCCGCCA GGGCCAGTCC TTCGACGTGC AGGCCACCGG CTACGCGGCC
TTTGCCGACA GCTTCCCCTT CGAGGAGACC CCGGACCAGG CCCGGGCCAT CGAGGCGGTG
CTGGAGGACA TGGCCTCCCC CCGCCCCATG GACCGGGTGG TGTGCGGCGA CGTGGGTTTC
GGCAAGACCG AGGTGGCCAT GCGCGCCGCC TTCGTGGCCG CCAGCAGCGG CCAGCAGGTG
GCGGTGCTGG TGCCCACCAC CCTGCTGGCC CAGCAGCATT ACCAGAACTT CAGCGACCGC
TTCGCCGACT GGCCCATCCG CATCGAGTCC CTGTCGCGCT TTCGCAGCGC CAAGGACACC
AAGGCCGTGC TGGAGGGCCT GGCCGACGGG CGCGTGGACA TCGTCATCGG CACCCACAAG
CTCATCCAGG GGGACGTGAA GTTCAAACGC CTGGGCCTGG TCATCATCGA CGAGGAACAC
CGCTTCGGCG TGCGTCACAA GGAGCGCCTC AAGGCCCTGC GCGCCGAGGT GGACATGCTC
ACGCTGACCG CCACGCCCAT TCCGCGCACG CTGAACATGG CGCTCTCGGG CCTGCGGGAT
CTGTCCATCA TCGCCACGCC GCCCATGGAG CGTCACGCCA TCAAGACCTT CATCAGCCAG
TGGAACGACG CGCTGATCCA GGAGGCCATC ACCCGCGAGA TCCGCCGCGG CGGGCAGGTC
TACTTCCTGC ACAACGCGGT GGAGAGCATC GAGAGGAAGG CCCGCGAGAT CGCCGAGCTG
GTGCCCGGCG CCGACATCGG CATCGCCCAC GGGCAGATGC GCGAGAGCGA GCTTGAGAAG
GTGATGCTGG ACTTCTACCA CCGGCGCCAC AACGTGCTGG TGTGCACCAC CATCGTGGAA
AGCGGCATCG ACGTGCCCAC CGCCAACACC ATCATCATCG ACCGCGCCGA CAAGCTGGGC
CTGTCCCAGC TGCACCAGCT GCGCGGCCGG GTGGGCCGTT CCCACCACCG GGCCTACGCC
TACCTGATCA CGCCCCACCC CTCGGCCATG ACCCCGGATG CGGTCAAGCG CCTGGAGGCC
ATCGAGTCCC TGGAAGACCT GGGCGTGGGC TTCACCCTGG CCTCCCACGA CCTGGAGATC
CGCGGCGCCG GCGAACTGCT GGGCGAGGGC CAGAGCGGCC AGACCCAGGA GATCGGCTTC
ACCCTCTACA ACGAGCTGCT GGAGCGGGCG GTGAAGGCCA TGAAGAAGGG CGAGATGCCG
GACCTGGACC GTCCCATGGC CGAGGTCACC GAAGTGGACC TGGGCGTGCC GGCGCTGCTG
CCCGACGACT ACGTGCCCGA CGTGCACACG CGCCTGATCC TCTATAAGCG CATCGCCAGC
TGCCAGTCCG AGGCCGCCCT GCGGGAACTG CAGGTGGAGA TGATCGACCG CTTCGGCCTG
CTGCCCGCCC AGGCCAAGAA CCTGATGGCG GTGACCGAAC TGCGCCTGAG CCTGGAACCC
CTCGGTGTGC GCAAGCTGGA GGTGGGTCCC CAGGGCGGGC GTTTCAGTTT CCAGGCCACC
CCCAACCTGG ATCCCGCGCG GCTCATCCAG CTGATCCAGT CGGACCCGAA GACGTACAAG
ATGGACCCGG AGCAGCGCCT GCGCTTCTTC GAACCCATGG AGGACCTGGA GCAGCGCATC
CAGGCGGTAA AGCGTATCCT GAACACCCTG GCCATCAAGC GGGAGGCCGC CTGA
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| Protein sequence | MSVLYSPLTP PALPDKPGQH RWGRLYGAAR GLAMARALAG HKGLGVVITP DTREAETLAR
ELEFFLGDDS LPVLTLPDWE TLPYDLFSPH EDIISQRLET LYRLPDLSRG ILVVPVNTLM
QRIAPRAWLQ GRVLMLANGD RLDRDALRRN LEQAGYHCVS QVMEHGEFAV RGSLIDLFPM
GSLEPYRVDL LDDEIESIRS FDPESQRSLD SVNAVRLLPA HEFPMDEAAI KGFRQRYRTR
FEGDPQASII YRDVSQGMAP AGIEYYLPLF FEQMDTLFDY LPGNVRLIQV GGIEDTAAEF
LAQAAQRHEQ RRHDRERPIL SPEEIFLTAE ELKAQLTGRP GIRVERPEQL DATPGAVNFD
VGALPDLRLH IRQSDPAASL KTFLDGFDGR VLIAAESAGR REFLVDSLRP FGLPPTPVED
WQGFVSGDAR LAITVAPVED GMRMACCGLA VITEPALFGE RAHQERRRKR PTRDADAVIS
NLTDLHPGAP VVHEEHGVGR YLGLQKLAVG GQETEFLALE YAGGDKLYVP VSSLHLVSRY
TGADTEHAPL HKLGGEQWAK IRRKAAEKAR DVAAELLEIY ARRAARQGQS FDVQATGYAA
FADSFPFEET PDQARAIEAV LEDMASPRPM DRVVCGDVGF GKTEVAMRAA FVAASSGQQV
AVLVPTTLLA QQHYQNFSDR FADWPIRIES LSRFRSAKDT KAVLEGLADG RVDIVIGTHK
LIQGDVKFKR LGLVIIDEEH RFGVRHKERL KALRAEVDML TLTATPIPRT LNMALSGLRD
LSIIATPPME RHAIKTFISQ WNDALIQEAI TREIRRGGQV YFLHNAVESI ERKAREIAEL
VPGADIGIAH GQMRESELEK VMLDFYHRRH NVLVCTTIVE SGIDVPTANT IIIDRADKLG
LSQLHQLRGR VGRSHHRAYA YLITPHPSAM TPDAVKRLEA IESLEDLGVG FTLASHDLEI
RGAGELLGEG QSGQTQEIGF TLYNELLERA VKAMKKGEMP DLDRPMAEVT EVDLGVPALL
PDDYVPDVHT RLILYKRIAS CQSEAALREL QVEMIDRFGL LPAQAKNLMA VTELRLSLEP
LGVRKLEVGP QGGRFSFQAT PNLDPARLIQ LIQSDPKTYK MDPEQRLRFF EPMEDLEQRI
QAVKRILNTL AIKREAA
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