| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_1378 |
|---|
| Symbol | |
|---|
| ID | 3581957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 1597173 |
|---|
| End bp | 1598618 |
|---|
| Gene Length | 1446 bp |
|---|
| Protein Length | 481 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637685075 |
|---|
| Product | helix-hairpin-helix DNA-binding motif-containing protein |
|---|
| Protein accession | YP_289439 |
|---|
| Protein GI | 72161782 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3800] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.84072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACTT TGCCAAGTGA CCTAGATCTC GTCACCTTTG GCCAGCGGCT GCGCCACCTC
CGCCGCGCCC GCAACATGAC CCTCGCTGAA CTGGGAGAAC GCGTAGGACG CGCCCCGTCC
CAGCTCTCCC TGCTGGAAAA CGGCAAGCGG GAACCCAAGC TCTCCCTGCT CACCGCGCTC
GCCAAAGCCC TCGACGTCTC TGTGGAGGAG CTCCTCTCCC GCCAGCCCCC CAGCCGCCGC
GCCCAACTAG AGATCGCCCT CGAAGAAGCC CAGCGGGACC CCCTCTACCA GTCCCTCAAC
CTGCCCCACC TCAAAGTCGG CAAGCGCGTC CCCAACGACG TCCTCGAACA CATCGTCACC
CTCTACGAGG AACTCAAGCG GCGCGCCGCC AAACCCACCA CCACGAACGA GGAAGCCCGC
CGCGCCAACG CGGAACTCCG CCGCCTCATG AGCGAGCGCG ACAACTACTT CCCCGAGATC
GAAAAAGCCG CGCGGGAAAC CCTCGAAGCC GTCGGCTACC AAGGCGGGGC ACTCTCCCAG
GGCATGATCC TCGCCATCGT CGCCCACCAC GGATTCACCC TGCGCTACGT CCCCGACCTG
CCCCGCTCGG TGCGCTCAGT CACCGACACC CGCAACCGCC GCATCTACCT CAAGCGGGAA
TCGCTGGGCA TGCACACGCC GCGCACCATC CTGCTGCAGA CCCTCGGCCA CTTCGTCCTC
GGCCACACCC CGCCCCGCGA CTTCGCCGAC TTCCTCCGCC AACGCGTGGA AGCGAACTAC
TTCGCCGCCG CGGTCCTCAT CCCCGAATTC ACGGCCGTCC CGTTCCTCAC CGAGGCCAAA
CGGCAACGCG ACCTGTCCGT CGAAGACCTC CGCGACGTCT ACGCCGTCTC CTACGAGATG
GCCGCCCACC GGTTCACCAA TCTGGCCACC CGCCACCTCG ACCTCGTCTG CCACTTCATC
CGCAACGACG AGACCGGCAT CATCTACAAG GCCTACCAAA ACGACGGGCT GATCTTCCCC
ACCGACGACA CCGGGGCCAT CGAAGGCCAG CGCCTGTGCC GCTACTGGGC GGGCCGCCAA
GTCTTCGCCT CCCCCGACCG CTATTCGATC TACTACCAGT ACACCGACAA ACCCAACGGC
ACCCACTGGT GTGTGGCCCA TGTCGACCCC AGCCGGGAAC GCAACTTCGC CATCACCCTG
GGCGTGCCCT ACAAGGAATC GCGGTGGTTC CGCGGCCGGG AGACCACCAA CCGCACCAAA
TCCGAGTGCC CGGTCGGGGA ATGCTGCGTG CGGCCCCCCT CGGAGCTCGC CTCCCGTTGG
GAAGGCAACG TCTGGCCGTC GGCCCGCGCC CACTCCCACG TCCTGGCCGC CCTGCCCACC
GGCCAATTCC CCGGCGTCGA CGAGACCGAC GTCTACACCT TCCTCGAAAA ATACGAGACC
GCATAA
|
|---|
| Protein sequence | MPTLPSDLDL VTFGQRLRHL RRARNMTLAE LGERVGRAPS QLSLLENGKR EPKLSLLTAL
AKALDVSVEE LLSRQPPSRR AQLEIALEEA QRDPLYQSLN LPHLKVGKRV PNDVLEHIVT
LYEELKRRAA KPTTTNEEAR RANAELRRLM SERDNYFPEI EKAARETLEA VGYQGGALSQ
GMILAIVAHH GFTLRYVPDL PRSVRSVTDT RNRRIYLKRE SLGMHTPRTI LLQTLGHFVL
GHTPPRDFAD FLRQRVEANY FAAAVLIPEF TAVPFLTEAK RQRDLSVEDL RDVYAVSYEM
AAHRFTNLAT RHLDLVCHFI RNDETGIIYK AYQNDGLIFP TDDTGAIEGQ RLCRYWAGRQ
VFASPDRYSI YYQYTDKPNG THWCVAHVDP SRERNFAITL GVPYKESRWF RGRETTNRTK
SECPVGECCV RPPSELASRW EGNVWPSARA HSHVLAALPT GQFPGVDETD VYTFLEKYET
A
|
|---|
| |