| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0963 |
|---|
| Symbol | |
|---|
| ID | 3579165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 1129826 |
|---|
| End bp | 1131904 |
|---|
| Gene Length | 2079 bp |
|---|
| Protein Length | 692 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637684658 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_289024 |
|---|
| Protein GI | 72161367 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG1276] Putative copper export protein
[COG3336] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0463859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTTCCC CCAGTAATCA ACGTGTGAGA ACGAACGCGC TCGCCGCGGG CGAGACCCTC
GTGCTGGTCG CTGCGGCTTC CGCAGCGGTC TGCCTGATCG CGCTGGTGCT CGCCATGCTG
CTGGGCGGAG CCGGATACCC CCAGATCACG CCGGGGCTGC CGGATCCGGG AATGCTGACC
CGCTGGGGGT TGCCGGTCGC GAAGACGGTG ATGGACGTCT CCGCCGCGCT GACGTTCGGC
CTGATCGTGC TCGCCGTGTT CCTGCTGCCG GTTGCGCGCA ACGGCGAGCT GGGCGAGCAG
GCGCAAGGCT ATGTGCGCGC CGCCTCGTGG GCCGCCCTGG TGTGGGCGGG CGCGGCCGCA
GCCACGCTGG TGTTCCAACT CTCCGACATT TTGGGCCGCC CGGTCGCGGA GATCGTCGGC
AACGAGATCA CCAGCTACGC GAGTTCGGTC CCGCAGGGGA TCGGGCTGCT GTTGACGATC
CTGGGCGCGC TGGGCGCCGC ACTGATCGGC CGCGTGGTGG TGACCGCCAC GGGCGCGGCA
CTGCTCAGCC TGCTGGTGCT GGTCGGCATG CTGCCGCCCC CGCTAACCGG GCACGCTTCT
TCCGCGGGCA GCCATGAGAT GGCGATCGTC GGCTTGTCGC TGCATGTGGC GTCGGTCGCC
TTGTGGGTGG GCGGGCTGGC CGCCTTGTTC TTCCACGCGA TGCGCGGCAG CGGCGAGCAC
GTGCCGACCG CGGTGCAGCG GTTCAGCACG ATGGCGCTGT GGGCGTGGAT CGGTGTGGCG
CTGAGCGGCC TGGCGAGCGC GGCAAGCCGG CTGACGAGCG TGGCGAGCCT GTTCACCACC
GCCTACGGCC AGGTGATGCT CGCCAAAGTG GCGGTCTTCG TCATCTTGGG TGCGCTGGGC
TGGGTGCACC GCACCCGCAC GGTCCCTCAG ATCACCGAGG ATTCGGGCCG CCGCCTGTTC
CTGCGGTTCG CGGGCGTGGA AGTCGTGGTG ATGGCGGCGG CGATGGGGTT GGCGGCCGCG
TTGAGCCGCA CCGCCCCGCC CCCGGACCTC AACCGGGCCA CGGACGCGTT CCGCAACCTC
ACTGGGTTTT CCATGCCGCC GCCGATGAGC TTGCGGACCC TGCTCACCGA GTGGCGCCCC
GACTTGTTCT TCATCCTGGT CATCGTGGCG CTGGGCGGCT TGTATGCGGC CGGGGTGATC
CGGTTGCAGC GCCGCGGCGA CTCCTGGCCG TGGGGGCGCA CCGCCGCGTG GTTCGCGGGC
CTGCTGGTGC TGGGCATCGC CTTGCTCACC GGTGTGGGCA CCTACTCGTA TGTGCTGTTC
AGCATGCACA TGGTGCAGCA CATGGTGCTG TCGATGCTGG TGCCGATCCT GCTGGTGCTG
GGCGCCCCGG CCACGCTGGC GCTGCGCGCG CTGCGCCCGG CGAAGCAGCG GGGGGACCGC
GGCCCGCGGG AGTGGCTCAC CGCGTTCCTG CACGGCTGGT ATGCGCGCCT GGTGACGCAC
CCCGGGTTCG CCACCCCCAT GTTCGTCATC AGCATCTACG CGCTGTATTT CACGCCGCTG
TTCGGCACCC TGATGCAGGA CCACTTGGGG CACGTGTTCA TGAACGTGCA CTTCCTGCTG
TCGGGTTTCC TGTTCTACTG GATCATCATC GGGGTGGACC CGGCGCCGCG GAAGATCCCG
TTCCTGCTGC GGATCGTGCT GCTGCTGGTG GCGATGGGCT TCCACGCGTT CTTCGGCGTG
GCGATCATGA TGAAGTCCGA GCCGCTCGGC ATGGAGTACT ACGGCCAGTT CGAGGTGCCG
TGGCGGGACA GCCTCGCTGA CGACCAGTAC GCGGGCGGCG GCGTGGCGTG GGCGCTCGGC
GAGATCCCGA CGATGCTGGT GCTGATCGCG CTGGTGGTGC AGTGGGCGCG GGACGAGGAG
CGCACGGAGC GCCGCCGCGA GCGGCACAGC CAGCGCGGCG GTTCGGAGGA CGCCGACTTG
GACGCGTACA ACGCCTACCT GGCGTCGCTG CACCGCCGGA CCAGCCAGCA GCAGGGCCAG
CCGGGACCGG AGCAGCCGGA ACAGGAACCG CAACCCTAG
|
|---|
| Protein sequence | MASPSNQRVR TNALAAGETL VLVAAASAAV CLIALVLAML LGGAGYPQIT PGLPDPGMLT
RWGLPVAKTV MDVSAALTFG LIVLAVFLLP VARNGELGEQ AQGYVRAASW AALVWAGAAA
ATLVFQLSDI LGRPVAEIVG NEITSYASSV PQGIGLLLTI LGALGAALIG RVVVTATGAA
LLSLLVLVGM LPPPLTGHAS SAGSHEMAIV GLSLHVASVA LWVGGLAALF FHAMRGSGEH
VPTAVQRFST MALWAWIGVA LSGLASAASR LTSVASLFTT AYGQVMLAKV AVFVILGALG
WVHRTRTVPQ ITEDSGRRLF LRFAGVEVVV MAAAMGLAAA LSRTAPPPDL NRATDAFRNL
TGFSMPPPMS LRTLLTEWRP DLFFILVIVA LGGLYAAGVI RLQRRGDSWP WGRTAAWFAG
LLVLGIALLT GVGTYSYVLF SMHMVQHMVL SMLVPILLVL GAPATLALRA LRPAKQRGDR
GPREWLTAFL HGWYARLVTH PGFATPMFVI SIYALYFTPL FGTLMQDHLG HVFMNVHFLL
SGFLFYWIII GVDPAPRKIP FLLRIVLLLV AMGFHAFFGV AIMMKSEPLG MEYYGQFEVP
WRDSLADDQY AGGGVAWALG EIPTMLVLIA LVVQWARDEE RTERRRERHS QRGGSEDADL
DAYNAYLASL HRRTSQQQGQ PGPEQPEQEP QP
|
|---|
| |