| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0817 |
|---|
| Symbol | |
|---|
| ID | 3579696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 965533 |
|---|
| End bp | 966543 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637684510 |
|---|
| Product | ABC peptide/nickel transport system permease protein |
|---|
| Protein accession | YP_288878 |
|---|
| Protein GI | 72161221 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGGTA GCGCGGTGGG CCGCCGGGTC GTGGTCCCGC TGCTGCGGCG GGTGGTGCGG
CGGGCGGTGC TGCTGTTCAC CGCGGTGAGC TGTGTCTACC TTCTGGCGGC CGCCACGCTG
CATCCCCGGG AGAACTTCGA GGCGCAGCGG CCGCCCCCGC CTCCTGCCGC GGTGGATGCC
GCTTTGGACG CCGCTAATCT CAACGACCGC ACGCCCCTGT TCCAGCGGTA TGCGGTGTGG
ATTTCGGGGA TAGCGGTCGG CGACTTCGGA CGCACGTGGG ACGGGGCTTC GGTCAACGAG
GAGCTGTCCC GGCGGATCGG GGTGAGTGTG CGGCTGCTGG CGGCCGGGGC CGTGCTCGGC
TGTATCGGCG GGGTGGCGCT GGGCACGTGG ACGGGCAGCC GGGTGCGGGG GAGCGCAGAC
CGGGCCGTGA CTGCGCTGTC GCTGCTGGTG ATCTCCGTGC CGGTAGTGGT GCTCGCCGTG
GCGCTCCAGC ACGTGGGGGT GTGGGCCAAC CAGGTGGCGG GGATGGATCT GGTGCGGGTC
ACCGGGGAGG CTACGCCCGG GTTCTCCGGC GGGGTGGGGG AGCAGGCGCT CGACCGGCTG
CGCCACCTGG TACTGCCGAC ACTGGCGGTG GCGCTCCCGC AGATCGCCTT GTACAGCCGG
TACCAGCGTT CGCTGATCGC CGATCAGGTG GGCGCCGAGT ATCTGCGCAC GGCGCGGGCT
AAGGGGATGA CCCGGTCGCA GGCGGTGGTG CGGCACGCGC TGCGGGTCAC GCTGATTCCG
GCGGCCGCGT ATTTCAGCTA TTCCCTGGCT GTGCTACTGA CCAGTACGGT TTTCACCGAG
CAAGTGTTCG GATGGCACGG GGTCGGCGAG TACCTGTTCG AAGCGGTAGG GCAGGGGGAT
GTGAACGCGG TTGCGGCGGT CTGCTGTTTC GGGGCGGTGT GCGTGACCGC GGCAGGAGTG
GTCTCTGATC TGGTGCGTGC GGTGGTGGAT CCGCGGAGCC AGGCGGGATA A
|
|---|
| Protein sequence | MSGSAVGRRV VVPLLRRVVR RAVLLFTAVS CVYLLAAATL HPRENFEAQR PPPPPAAVDA
ALDAANLNDR TPLFQRYAVW ISGIAVGDFG RTWDGASVNE ELSRRIGVSV RLLAAGAVLG
CIGGVALGTW TGSRVRGSAD RAVTALSLLV ISVPVVVLAV ALQHVGVWAN QVAGMDLVRV
TGEATPGFSG GVGEQALDRL RHLVLPTLAV ALPQIALYSR YQRSLIADQV GAEYLRTARA
KGMTRSQAVV RHALRVTLIP AAAYFSYSLA VLLTSTVFTE QVFGWHGVGE YLFEAVGQGD
VNAVAAVCCF GAVCVTAAGV VSDLVRAVVD PRSQAG
|
|---|
| |