| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0616 |
|---|
| Symbol | |
|---|
| ID | 3581543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 714869 |
|---|
| End bp | 715990 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637684306 |
|---|
| Product | branched-chain amino acid aminotransferase |
|---|
| Protein accession | YP_288677 |
|---|
| Protein GI | 72161020 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
|---|
| TIGRFAM ID | [TIGR01123] branched-chain amino acid aminotransferase, group II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACG GCACCACCAC AAGCGGGTTG ACGTTCGATA TTCGACTCTC CACCGAGCGG
AAGACCCCGC AGGAGCGAGA GGCGATCCTG GAAAACCCCG GGTTCGGCAA AGTGTTCACC
GACCACATGG TGACCATCCG CTACACCGCA GACCGCGGCT GGCACGATGC CCGACTCGAG
CCCTACGGGC CGCTGTCGCT GGACCCGGCC ACCTCAGTCC TGCACTACGC CCAGGAGATC
TTCGAAGGGC TCAAAGCGTA CCGCCACCCC GACGGCAGCA TCGCCTGCTT CCGGCCGGAA
GCCAACGCCG CACGGTTCAA CTCCAGTGCG AAGCGCATGG CGATGCCGGA ACTTCCCGAA
GAACTGTTCC TGGGGGCGAT CGACACCCTG CTCACCTACG ACGGCGACTG GGTCCCCACC
CAGGCTGACA CCAGCCTGTA CCTGCGCCCC TTCATGATCT CCACCGACGT CGGCCTGGGC
GTCAACAGCC CGTCCAGCAG CTACCTGTTC GTGCTGATCG CTTCCCCGTC CGGCGGCTAC
TTCGCCAACG GGGTCAAACC GGTCACCGTG TGGCTGTGCG AGGACTACAC GCGGGCTGCG
CCCGGCGGAA CCGGTGCGGC CAAGTTCGGC GGCAACTACG CGGCCAGCTT CCTGGCCCAG
GCCCAAGCCG TCGAACAGGG CTGCGACCAG GTCGTCTGGC TGGACGCAGT GGAACACCGC
TGGGTGGAGG AGATGGGCGG CATGAACCTC TTCTTCGTCT TCGGTTCCGG AGAGAACGCC
CGCCTCCTCA CCCCTGAACT GACCGGCACC CTCCTGCCCG GCATCACCCG TGACTCGCTG
CTGAAGCTCG CCCCCGACCT CGGCTACCCG GTGGAAGAGG GGCGGATTTC TACCGACGAG
TGGCGGGAGG CCGCGGCCAG TGGAGAGCTC ACCGAGGTGT TCGCCTGCGG TACTGCCGCC
GTCATTACCC CCGTCTCGCA CGTGAAGAGT CGGCAGGGCG AGTTCCAGAT CGGTGACGGC
ACCCCCGGCC CCATCACCAT GCGCCTGCGG GAGGAGCTCG TCGGCCTGCA GTACGGCACC
CGCCCCGACT CCCACGGCTG GATCCGCAAG TTCGGCCGCT AA
|
|---|
| Protein sequence | MSNGTTTSGL TFDIRLSTER KTPQEREAIL ENPGFGKVFT DHMVTIRYTA DRGWHDARLE
PYGPLSLDPA TSVLHYAQEI FEGLKAYRHP DGSIACFRPE ANAARFNSSA KRMAMPELPE
ELFLGAIDTL LTYDGDWVPT QADTSLYLRP FMISTDVGLG VNSPSSSYLF VLIASPSGGY
FANGVKPVTV WLCEDYTRAA PGGTGAAKFG GNYAASFLAQ AQAVEQGCDQ VVWLDAVEHR
WVEEMGGMNL FFVFGSGENA RLLTPELTGT LLPGITRDSL LKLAPDLGYP VEEGRISTDE
WREAAASGEL TEVFACGTAA VITPVSHVKS RQGEFQIGDG TPGPITMRLR EELVGLQYGT
RPDSHGWIRK FGR
|
|---|
| |