| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tfu_0523 |
|---|
| Symbol | |
|---|
| ID | 3578989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermobifida fusca YX |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007333 |
|---|
| Strand | + |
|---|
| Start bp | 589304 |
|---|
| End bp | 592438 |
|---|
| Gene Length | 3135 bp |
|---|
| Protein Length | 1044 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637684211 |
|---|
| Product | putative ATP-dependent DNA helicase |
|---|
| Protein accession | YP_288584 |
|---|
| Protein GI | 72160927 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases
[COG2887] RecB family exonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACAACC CCCCGTACCG TCTTGTACGC CGCATCCGGC ACCGTGCGCC CGCACCCGAG
CTCGACGACG ACCAGCGCCG GGTCGTCGAC CACGAAGGCG GCCCGCTGCT CGTGCTCGCC
GGTCCAGGAA CCGGGAAGAC CACGACGATC GTCGAAGCGA TCGTCGACCG GGTCGAGAAC
CGGGGCGTGG ACCCCGCGCA CGTGCTCGTC CTCACCTTCA GCCGCAAAGC GGCCCAAGAA
CTCCGGGAAC GCATCACCGC CCGGCTGCGG CGCACCGTCC GCGAACCGCT CGCCCTCACC
TTCCACAGCT ACGCCTACGC GCTGATCCGC CGCGAATTCC AGCGGGTCGG CGACCACGCG
CCCCGCCTCC TGTCCGGCCC GGAGCAGCTG ATGGAAGTGC GGGAACTCCT CAAAGGCGAA
CTCGCTGACG GCGCCCCCGG GTGGCCCGAA CAGCTCCGCC CCATGCTGCA CACCCGCGGC
TTCGCCGAGG AGCTCCGCGA CTTCCTCATG CGGGTGCAAG AACGCGGACT CCACGCCGAC
GACGTCCGGG AGCTCGGCCG CCGCCACGGG CGAGAAGACT GGGTGGCCGC CGGGGGATTC
CTGGAACGCT ACACCGGCCG CTTCGACATC GCCCCCGTGC CCACCTTCAA CTACGCGGAA
CTCGTGCGGG TCGCCGCCAA CCTGCTCAAC GACCCGGACA TCCAGGCGCG GGAGCGTGCC
GCCCGCAAAG TCGTGTTCGT CGACGAATAC CAGGACACCG ACCCCGCCCA GGAGGAACTG
CTTCACGCCC TGGCCGGAGA CGGCCGCGAC CTGGTCGTGG TCGGCGACCC CGACCAGTCC
ATCTACGGTT TCCGGGGAGC TGAAGTCCGC AACATCCTCA ACTTCCCCGA CCGGTTCCGC
ACCCCCACAG GAGACCCCGC GCCCGTGGTG GCGCTGCACA CCTGCCGCCG CAGCGGCGCG
GAACTGCTGC GGGTCTCCCG GGCCCTCGCC CAGCGGCTGC CCGCCGTCCC CGGGCCCGGC
GGCGAAGGGG TCAACGCGCA CCGCAACCTC GTGCCCGCCG AAGGGACACC CCCGGGACGG
GCTCGAATGC TCCTCGCGGA AAGCCCGGTC CACGAAGCCG CTGTCATCGC GGACCTGCTG
CGCCGCGCCC ACCTCATCGA CGGAGTGCCC TGGTCGCGCA TGGCAGTCCT TGTCCGCTCC
GTGACCCGAC ACGTCCCCGT ACTGCGCCGC GCACTCATCG CCGCCGACGT CCCCGTGACC
GTCGACGGCG ACGATCTGCC GCTGGCGTCC GAACCCCTTG TGCGGTCCAT GCTGCTGCTC
CTCCGCTGCG CATTCCACCC GGAGCGGTTG GACGAGGAAG CCGCCCACAA CCTGTTGACG
AGCGCGTTCG GAGAAGCCGA CGCGCTCGGA CTGCGGCGGC TCGGGCGCGC CTTGCGACAA
CTGGAACTGG ACGCCGGCGG CCGCCGCCCC GCCGCGGCCC TGCTCGCTGA GATCCTCCAC
GACCCCCGCG ACCTGGTGAT GGTCGACCCG GAGGTGCGGG CCCCTGCGGA GCGGATCGCC
ACCCTGCTGC GCCTGGTCCG CGACAGCATC GCCGAAGGCG CCAACGCAGA AGAAGTGCTG
TGGCGGATGT GGCACCACTC CGGGCTCGCC GACACCCTGC TGCGCGCCAG CCAAGCGGGC
GGCCGCCACG GTGCGGCCGC AGACCGGGAA CTGGACTCGG TGATGGCGCT TTTCGAGCGG
GCCGCCCGCT ACTGCGACCG GCTGCCGCCG GGTTCCCCGG AAGGCTTCCT GGAAGACCTG
GAAGCCCAGG AGATCCCCGG GGACACGCTC GCCGAACAGG CCCCCCAAGG AGAGACGGTG
CGGATTCTCA CCGCCCACCG CTCCAAAGGA CTGGAGTGGG ATCTGGTCGT GGTTGCCGGC
GTCCAAGAAG GCACCTGGCC GGACCTGCGG CTGCGCGGTT CCCTGCTCGG CGTGGAACAG
CTTCTCGACA CGGTGGGCGG TTTTGCGGAG ACTTCCCCGG CCGCCGTGGT GTCCAAGCAG
CTCGACGAAG AACGGCGGCT GTTCTACGTC GCGCTCACCC GGGCCCGGCG GGAACTCGTG
GTGACCGCGG TCGGCGGGGA GGACGTCGAA GAACGGCCTT CCCGGTTCCT CACCGAACTC
GGCCTCGGCG AACCGGAACG CCTGGCCACC GGATACCGCT GGCTGTCGCT GCCCGCCCTG
GTCGCCGACC TGCGCGCCAC GCTCCTCGAC CCGCACACCG ACGAGCCGGT GCGCCGCGCC
GCAGCCGCCC ATCTGGCCCG CCTCGCCGAT GCGGGAGTGC GCGGCGCCGA CCCCGCGGAG
TGGTACGCCC TCACCGAACT CTCCGACAGC TCACCCCTCG TCCTCGAAGG GGAGCAGATC
CGTATCTCCC CTTCCCAAGT GGAGAAGTTC ACCACCTGTG AACTGCGCTG GCTGCTGGAG
ACCGCCGCGG GGGCGGAAAA ACGCCGGGCC GCGTCCGGGA TCGGCAGCAT CGTCCACGCG
CTGGCCCGCA TCGCCGCGGA GAACCCGGAC CTTCCGGAAC TCCTGCGGCG CATGGACCAG
ATCTGGTCCG ACCTTGACTT CGGCGGCCCG TGGTACGCCG AAAAACAGCG GGAGCGCGCC
GAGGAGATGC TGCAGCGGTT CCTGGACTGG CAGAAGGAGA ACCCGCGGGA ACTCGTCGCC
ACCGAGAAAA AGTTCCGGGT CGAAGTCGGC AACATCGAAA TCTCCGGCCA AGTGGACCGG
CTGGAACGCG ACGCGGAAGG ACGCGGTGTC ATCGTCGACA TCAAGACCGG GACCGCGGTA
CCGGACCGGG AGATCAGCCG CCACCCCCAG CTCGGCGTCT ACCAGTTGGC GCTGCTGATG
GCGGCGTTCG AACACTACGG CCTGGTCGAG CCGGGCGGCG CAGCACTGCT GCAGATCGGC
GACCGGAAAA CCGCGAAAGA GCAGACCCAG CCGGCCCTCG CCGACGACGC GGACCCTGAA
TGGCCGCAGC GGCTGGTGCA GAAGGTGGCC GCGGGCATGG CGGGGGCCCG GTTCCGCGCG
AAAGCCACGC CGTCGTGCCG GCACTGTTCA GTCCGGGCAA GCTGCCCAGT GCAGAGCGAA
GGCGACCACG TCTGA
|
|---|
| Protein sequence | MDNPPYRLVR RIRHRAPAPE LDDDQRRVVD HEGGPLLVLA GPGTGKTTTI VEAIVDRVEN
RGVDPAHVLV LTFSRKAAQE LRERITARLR RTVREPLALT FHSYAYALIR REFQRVGDHA
PRLLSGPEQL MEVRELLKGE LADGAPGWPE QLRPMLHTRG FAEELRDFLM RVQERGLHAD
DVRELGRRHG REDWVAAGGF LERYTGRFDI APVPTFNYAE LVRVAANLLN DPDIQARERA
ARKVVFVDEY QDTDPAQEEL LHALAGDGRD LVVVGDPDQS IYGFRGAEVR NILNFPDRFR
TPTGDPAPVV ALHTCRRSGA ELLRVSRALA QRLPAVPGPG GEGVNAHRNL VPAEGTPPGR
ARMLLAESPV HEAAVIADLL RRAHLIDGVP WSRMAVLVRS VTRHVPVLRR ALIAADVPVT
VDGDDLPLAS EPLVRSMLLL LRCAFHPERL DEEAAHNLLT SAFGEADALG LRRLGRALRQ
LELDAGGRRP AAALLAEILH DPRDLVMVDP EVRAPAERIA TLLRLVRDSI AEGANAEEVL
WRMWHHSGLA DTLLRASQAG GRHGAAADRE LDSVMALFER AARYCDRLPP GSPEGFLEDL
EAQEIPGDTL AEQAPQGETV RILTAHRSKG LEWDLVVVAG VQEGTWPDLR LRGSLLGVEQ
LLDTVGGFAE TSPAAVVSKQ LDEERRLFYV ALTRARRELV VTAVGGEDVE ERPSRFLTEL
GLGEPERLAT GYRWLSLPAL VADLRATLLD PHTDEPVRRA AAAHLARLAD AGVRGADPAE
WYALTELSDS SPLVLEGEQI RISPSQVEKF TTCELRWLLE TAAGAEKRRA ASGIGSIVHA
LARIAAENPD LPELLRRMDQ IWSDLDFGGP WYAEKQRERA EEMLQRFLDW QKENPRELVA
TEKKFRVEVG NIEISGQVDR LERDAEGRGV IVDIKTGTAV PDREISRHPQ LGVYQLALLM
AAFEHYGLVE PGGAALLQIG DRKTAKEQTQ PALADDADPE WPQRLVQKVA AGMAGARFRA
KATPSCRHCS VRASCPVQSE GDHV
|
|---|
| |