| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_1126 |
|---|
| Symbol | |
|---|
| ID | 4242858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 1772579 |
|---|
| End bp | 1773457 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 638106349 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_720961 |
|---|
| Protein GI | 113474900 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.19595 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000508122 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGATAAGTA GATATTCACT AGCTAAATTT TTCCGGCTTT CTAGTAAACC CACTATTTCA
ATGCAGATGA TGTGGCTGGG TTTAATAGTT ACATTGCTAT TTATATTAAT CAGTATTTTT
GCTCCACTTT TAGAAAGTTT AGGTTGGTTG CAAGACCCTC AAGAATTTCT CAGTAACCCT
ATACATCAAC CACCTTCTTT TGAACATTGG TTTGGCACAA GTCGTCAAGG TTATGATGTA
TTTTCTCGAA CTTTATTCGG CGCACAAGTT GCTTGGAAAG TTGTAATTTT AGCCACAACA
TTAAGTTTAA TTATTGGTGT GCCATTAGGA ATGATAAGTG GTTATCTTGG AGGTAGAATT
GATAAAGTTT TAATATTTTT TATGGATACT GTTTATACTT TACCAGGATT ATTACTTTCT
ATAACTTTAG CTTTTGTAGT TGGAAAAGGA ATATTAAATG CAGCGATCGC TCTGAGTATT
GCTTATATTC CTCAGTATTA TCGAGTAGTT CGTAACCATA CAGTTAGTGT CAAAACAGAA
CTTTTTATTG AAGCAGCAAG AGCGATGGGT GCTAATACTT GGAGAGTGTT GACTCGTTAC
TTATTTATGA ATGTTATTCA GAGTGTTCCT GTGTTGTTTA CTCTTAATGC TGCAGATGCA
GTTTTAGTAT TAGGAGGATT AGGATTTTTA GGATTAGGAT TACCTCCTGA AACTGCTGAA
TGGGGAAATG ATTTAAGGTT GGCTTTAAAT GCTTTACCAA CAGGTATTTG GTGGACTGCT
TTTTTCCCTG GTTTTACTTT AACTTTAATG GTGGTTGGAC TCTCTTTATT AGGAGAAGGA
TTGAATGAAT TTGTTAATCC TAAGTTGAGA AATCAGTAG
|
|---|
| Protein sequence | MISRYSLAKF FRLSSKPTIS MQMMWLGLIV TLLFILISIF APLLESLGWL QDPQEFLSNP
IHQPPSFEHW FGTSRQGYDV FSRTLFGAQV AWKVVILATT LSLIIGVPLG MISGYLGGRI
DKVLIFFMDT VYTLPGLLLS ITLAFVVGKG ILNAAIALSI AYIPQYYRVV RNHTVSVKTE
LFIEAARAMG ANTWRVLTRY LFMNVIQSVP VLFTLNAADA VLVLGGLGFL GLGLPPETAE
WGNDLRLALN ALPTGIWWTA FFPGFTLTLM VVGLSLLGEG LNEFVNPKLR NQ
|
|---|
| |