| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1773 |
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| Symbol | |
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| ID | 3761540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1934181 |
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| End bp | 1936547 |
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| Gene Length | 2367 bp |
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| Protein Length | 788 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637786511 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_392039 |
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| Protein GI | 78486114 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATAAGA ATTCAAACAA ATTCATCAAT TATCTGGTCA TCGGCTATTC ATTTGTCATT
ATCTTAGTGA CGATATCCGC CGGCATTTTC TTTAATTATG AACAAAAGAT CTCTCATGCC
TTTCAAACCT ACTCTGAAAA CAATGCTTTT CAAAACCATA TTGATGCCCT TTTCAATTCA
GCAACTCAGC GCAGCATCCT GATGGTGCGA ATGATCAATA CCGAAGACAT TTTTGAAATC
GATGAACTGC ATTTGCAAAT GTTTGCCCAT GAACAAAACG TCATTCAAAA CTTAGTGGCC
TTACGAAAGA ACACTGTTCG AGAAGACCAA AGAACCCTTC TCACCAAAGC CGGCGAAGTA
ATGACCCAAA ACCGTGCTTA CCAAGAAAGC GTCTATAACT TATTAATGGA AAACAAAAAA
CAAGCCGCTT TGAATCAACT TGTCGATGTC ACATTACCGC TACAGAAACA AGTCATCAGC
ATCTTAAATC AACTGAAGAA AGGCTATACC GCTGAAATAA AACGATCGCA GGAACGATTC
GCCTTTTTAA TTTCAGAAAT GCGCAATTTG ATTCTATTAG TTGCCATTCC CATTTTGCTG
AGCATCTTTG TGATCGGCAT GATGAGCATT CGTCGTTTAA GACGGTTTGC AAACACACAA
CAGGAATTAT TAGAGAACTT GGAAGACCGA GTCAATAAGC GAACACATGA ATTACTGCTG
GATCGTAATT TAATGCAAAA CCTGAACGAA GCCATCGGTA TTTTTGATGA AAACGATCAA
CTCCATATCA GTAATAAAAA ACTCACTGAA CTGCGACTTT CGAACAACCT CGACAACTCG
CATTCCGTTT GGGAACTCTT ATCCAAGGCC TTTTTAAACT TAGATATTAA CGCCATTCAA
CATAAACTTG CCACACGGGG TGCCTGGCGT GGCGAAGCCG CTTTAACGAA CCATACTCAA
CAATACCTGA TTATTGATAT TGCCAAAGTA CAAGACAGCA GTTTACCCGG CATTTATTAC
TCCATCATCT TAACGGATAT CACCGAATTA AAAGGCATTC AAAACCAGCT GGAATTCACC
GCCAATTACG ATGTTGTCAC GCAACTGCCA AACCGATATT CTTTTAACTA TGAAATTTAC
AATCTCATTC AAAAATCTCC GAATGTGCCC TTCCATCTAT TTTATCTCGA CCTGAATGAT
TTCAAATGGG TCAACGACCA TTTAGGCCAT GCCGTCGGAG ATGAGTTCTT ATGGGAAGCT
GGACTGGCAT TCAAGCAGGC CTTGCCACCC GATCAATTTA TTGCCCGTCT TGGTGGAGAT
GAATTTGCCA TTATCATTCA AAAACCGATG CAACCGGTTG AATTGACACA ACTGGCAAAC
CAATTGTTGT CAAAACTGAA AACCGTGAAT CAAAAACAAA ACACCGGTCA CGAAGTGGGA
TGCAGCATTG GAATTTCTTC TTATCCCGAG CATGGAAACA CACCGGAAAT GTTGCTTAAA
CATGCGGACT ATGCAATGTA TTGCGCCAAA AAAGATGGCG ACCTACCTTA TTATTTATTT
TCACAGGAAA TGAATGAGCA ATTAAGCTAC TTGCATGAAA TCGAAGAAAG CTTGCATATC
GCGGTCCGTG AAAAGCAATT TCAAGTACAT TATCAACCCC AGTACAATTT GCATACGTTA
GAGTTGGTAG GCGCCGAGGC GTTAGTTCGT TGGCCCAGAA CCAATCGGAT GGTTTCTCCT
GGCGAATTTA TACCTCTGGC CGAAAAATTT GGGTTGATCA ATCAAATCGG CGAGTTTGTG
TTTGATACCG CCGTCAAACA AATCAATAGC TGGAGTAACT GTAAAATTGC TTTACCACGT
GTTGCCATAA ACACTTCCTC CACCCAATTG TTAACCGGAA ATTTTGGCGC TTTCGTCGAA
CACACGCTCA GCGAGAATCA TCTCGCCGCG GATCGCATCG ATATTGAAGT CACTGAATCG
GTGATGATGA AAAACATTGA ACATAATGGC GCAGGCGAAA ACGACACGAG TTGTTTGAGC
ATTTTGCAAG AAAAAGGACT CGAAATCTCG ATTGATGACT TTGGTACGGG GTATTCGTCA
CTGTCGTACA TTAAGCATTT AAATGTCGAT CGTATCAAAA TTGATAAAAG CTTCATTGAC
GATATTGAAT TCAAACCGGA AGCCCGTTCC ATTGTTAAAG CCATCATTAA CATGGGGCAC
AGCTTAGGAT TAAAGGTTTT AGCGGAAGGC ATTGAAACCC CAAATCAATT GGATATTTTA
AAATCGCTCA ACTGTGATGA GGGGCAAGGC TTCTTATTCA GTAAACCTTT AAACGCTGAA
AAATTTGAAA TGAAGTGTTT ATCTTAA
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| Protein sequence | MHKNSNKFIN YLVIGYSFVI ILVTISAGIF FNYEQKISHA FQTYSENNAF QNHIDALFNS
ATQRSILMVR MINTEDIFEI DELHLQMFAH EQNVIQNLVA LRKNTVREDQ RTLLTKAGEV
MTQNRAYQES VYNLLMENKK QAALNQLVDV TLPLQKQVIS ILNQLKKGYT AEIKRSQERF
AFLISEMRNL ILLVAIPILL SIFVIGMMSI RRLRRFANTQ QELLENLEDR VNKRTHELLL
DRNLMQNLNE AIGIFDENDQ LHISNKKLTE LRLSNNLDNS HSVWELLSKA FLNLDINAIQ
HKLATRGAWR GEAALTNHTQ QYLIIDIAKV QDSSLPGIYY SIILTDITEL KGIQNQLEFT
ANYDVVTQLP NRYSFNYEIY NLIQKSPNVP FHLFYLDLND FKWVNDHLGH AVGDEFLWEA
GLAFKQALPP DQFIARLGGD EFAIIIQKPM QPVELTQLAN QLLSKLKTVN QKQNTGHEVG
CSIGISSYPE HGNTPEMLLK HADYAMYCAK KDGDLPYYLF SQEMNEQLSY LHEIEESLHI
AVREKQFQVH YQPQYNLHTL ELVGAEALVR WPRTNRMVSP GEFIPLAEKF GLINQIGEFV
FDTAVKQINS WSNCKIALPR VAINTSSTQL LTGNFGAFVE HTLSENHLAA DRIDIEVTES
VMMKNIEHNG AGENDTSCLS ILQEKGLEIS IDDFGTGYSS LSYIKHLNVD RIKIDKSFID
DIEFKPEARS IVKAIINMGH SLGLKVLAEG IETPNQLDIL KSLNCDEGQG FLFSKPLNAE
KFEMKCLS
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