Gene Tcr_1722 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1722 
Symbol 
ID3761021 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp1883036 
End bp1883662 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content39% 
IMG OID637786460 
ProductTPR repeat-containing protein 
Protein accessionYP_391988 
Protein GI78486063 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAC ATTTTTTATT CGTGGTGGTT TTTTTAGTTT TGTTAAGCGG GTGCTCTTCA 
GAACCGAAAA AGCTGTCCGG CGAGATGAAA TCCTCGGTGC CAATGGAAGA AGTGAAGCCA 
TTGGCTAAAG ACTTAACAGA GGACGATGAG TATGAGTTTG CTTTAGATCT GGCTCGGATG 
AATATTGAGC AAGAGCATTA TGACAAAGCC TATTCGTTAC TTAAAAAATT AAAGCAGTTT 
AAGCCGGATG ACATTCGAAT TTATCGGCTG TTAAGTACTT ATTACGAGAA GCAAGGGGAT 
TTGAAAATGG CGTTTATCTC AAGTCAACAA ACCCTTAAAA ATGCCGCCAA AACCATACAG 
GATGAGCAGA TTTATGCTCG ATATGCCTTG TTAAATGAAA ATTATGCGGA AGCCGATAAA 
ATTTACCAGG CCTGGCTTGA TCGAACAGGG TCCCAAGCCG TGACGGTAAT CGCCTTAAAC 
AATCTAGGAT TCAGTGCGTT ACTCCAAAAG GATTTTGAGA GAGCGCAAAC CTATTTTTTA 
AAAGCGCTTA AGTTAGATCC CTTAAATGAA AAAGCGCGCA ACAATCTTAA ACTGATTGAA 
TCCATTCAAA CAGAACAGAC AAACTAA
 
Protein sequence
MKKHFLFVVV FLVLLSGCSS EPKKLSGEMK SSVPMEEVKP LAKDLTEDDE YEFALDLARM 
NIEQEHYDKA YSLLKKLKQF KPDDIRIYRL LSTYYEKQGD LKMAFISSQQ TLKNAAKTIQ 
DEQIYARYAL LNENYAEADK IYQAWLDRTG SQAVTVIALN NLGFSALLQK DFERAQTYFL 
KALKLDPLNE KARNNLKLIE SIQTEQTN