| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1558 |
|---|
| Symbol | |
|---|
| ID | 3760817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 1706702 |
|---|
| End bp | 1707877 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637786294 |
|---|
| Product | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase |
|---|
| Protein accession | YP_391824 |
|---|
| Protein GI | 78485899 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01984] 2-polyprenyl-6-methoxyphenol 4-hydroxylase
[TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00285508 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTTG AAAAGAAAGA CGTCTTTATT TCAGGCGGTG GCCCGGTTGG GTTGATTTTG
GCAATAGGGC TTGCGCGCGC AGGAAAATCC GTTGTGTTGG CAGAAAAAAA TGCGTTTGAT
CAAGGAGAAA AAGGGTCCTT TGATGGGCGA GTTCTGGCAT TAACGTATGG CAGTGTTTGT
TTTTTAGAGT CGTTAGGCAT TTGGTCGGGA CTTAAGTCGT ATACGACGCC GATTGAACAC
GTTCATGTGT CTCAAAAAGG TTATCTGGGA TTAACACATT TACATGCGGC TGAAATGAAG
GTGCCTGCTT TGGGGTACAG TATTACCGCT TCCGATTTAG GCAATGTGTT ATGGCAAATG
GCACAGGGTT TAGATAACGT TTCCTTGTTC TCTCAGTCAG GCCTGGTTGA TTTTCAATTG
AAAGAGAATC AACAACGGGT CTGTTTGGAA ACCCCGGACG GTCAACGAAA CGTTGAAGTT
AACTTGGTGG TGGGGGCTGA TGGTACACAG TCAACGGTTA GACAGCTATT AAAGCTGCCC
ATTGAGGTGA AAGATTATCA GGCGTTTGGT GTTATTGCCA AAATCGAAAC GGAAAAACAC
CCAAATGGTT GGGCTTTTGA GCGTTTTACC GAACAAGGGC CCGTCGCGCT GTTGCCGATG
CATGGGCATG AAAGCAAAGC TGTCTGGGTT GTACCGGCGG ATGAAATTGA TCAGGTAAAA
GCATTGGATG ATGAGGCCTT TATGCAGGCC TTTTCTCAAA GAATGGGAGA GCGTTTAGGG
GCGTTTTTCG CGGTCAGTGA TCGTGTGTTT TATCCGTTGA CGGAAACGTA CGTGCCGACC
TTTGTTAAGC CTCGTGCGGT ATTGATGGGG AATGCTTCTC ATACTCAGCA TCCGGTTGCG
GCTCAAGGGC TGAACTTAGG TATCAGTGAC ATTCAAGCAT TCTTGGAGCA GATACAAGAG
GCTACTGATT TAGGCGATTG GGCGTTGTTA TCAGATTATG CGGAAGAGCG TAAAGAACAT
CATGAAAAAA TCATGGGGTT AACCGATGGG TTGATTCAGT TGTTCCAAAC AGAGTCACCG
GCCATAGGCC ATATGCGAGG CTTGGGTTTG ATGGCGATGA ATGCCATTCC GTCTCTTAGA
AAACGGTTTA CTAAAATGAC GATGGGCATG AAATGA
|
|---|
| Protein sequence | MTVEKKDVFI SGGGPVGLIL AIGLARAGKS VVLAEKNAFD QGEKGSFDGR VLALTYGSVC
FLESLGIWSG LKSYTTPIEH VHVSQKGYLG LTHLHAAEMK VPALGYSITA SDLGNVLWQM
AQGLDNVSLF SQSGLVDFQL KENQQRVCLE TPDGQRNVEV NLVVGADGTQ STVRQLLKLP
IEVKDYQAFG VIAKIETEKH PNGWAFERFT EQGPVALLPM HGHESKAVWV VPADEIDQVK
ALDDEAFMQA FSQRMGERLG AFFAVSDRVF YPLTETYVPT FVKPRAVLMG NASHTQHPVA
AQGLNLGISD IQAFLEQIQE ATDLGDWALL SDYAEERKEH HEKIMGLTDG LIQLFQTESP
AIGHMRGLGL MAMNAIPSLR KRFTKMTMGM K
|
|---|
| |